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Sed0005060 (gene) of Chayote v1 genome

Gene IDSed0005060
OrganismSechium edule (Chayote v1)
DescriptionGibberellin-regulated family protein
Genome locationLG12:7036681..7038107
RNA-Seq ExpressionSed0005060
SyntenySed0005060
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008464949.1 PREDICTED: protein GAST1-like [Cucumis melo]1.0e-4377.78Show/hide
Query:  MPKKQKM-VMLFLVMILNLVLLVQNQAISEAPTPQPQPQL-----QHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS
        M +KQ + ++LF+VM+LN VLL  NQAISEAPTPQPQ         HGVTEGSLQPQECG RCT RCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ+
Subjt:  MPKKQKM-VMLFLVMILNLVLLVQNQAISEAPTPQPQPQL-----QHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS

Query:  CHCYNDWKTKRGGPKCP
        C CYN WKTKRGGPKCP
Subjt:  CHCYNDWKTKRGGPKCP

XP_022159226.1 protein GAST1 [Momordica charantia]7.4e-4781.9Show/hide
Query:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQPQLQH-----GVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSC
        M +KQ M++ FLVM LN VLLVQN AISEAPTPQPQP   H     GVTEGSLQPQECG RCT+RCSKTAFKKPCMFFCQKCCAKCLCVP+GTYGNKQSC
Subjt:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQPQLQH-----GVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSC

Query:  HCYNDWKTKRGGPKCP
         CYNDWKTKRGGPKCP
Subjt:  HCYNDWKTKRGGPKCP

XP_022980754.1 protein GAST1-like [Cucurbita maxima]1.0e-4374.58Show/hide
Query:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ-------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ
        M +KQ   M F VM+ N +LL QN +ISEAPTPQPQ       P   HGVTEGSL+P+ECGGRC  RCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ
Subjt:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ-------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ

Query:  SCHCYNDWKTKRGGPKCP
        SC CYN+WKTKRGGPKCP
Subjt:  SCHCYNDWKTKRGGPKCP

XP_023516497.1 protein GAST1-like [Cucurbita pepo subsp. pepo]1.2e-4476.92Show/hide
Query:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS
        M +KQ M M F VM LN +LL QN +ISEAPTPQPQ      P   HGVTEGSL+P+ECGGRC  RCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS
Subjt:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS

Query:  CHCYNDWKTKRGGPKCP
        C CYN+WKTKRGGPKCP
Subjt:  CHCYNDWKTKRGGPKCP

XP_038903614.1 protein GAST1 [Benincasa hispida]1.7e-4681.2Show/hide
Query:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS
        M +KQ MVMLFLVM+LN VLLV N AISEAPTPQPQ          HGVTEGSLQPQECG RCTERC KTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ+
Subjt:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS

Query:  CHCYNDWKTKRGGPKCP
        C CYN+WKTKRGGPKCP
Subjt:  CHCYNDWKTKRGGPKCP

TrEMBL top hitse value%identityAlignment
A0A0A0LI43 Uncharacterized protein2.7e-4282.52Show/hide
Query:  MILNLVLLVQNQAISEAPTPQPQPQL-----QHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGP
        M+LN VLLV N AISEAPTPQPQ         HGVTEGSLQPQECG RCT RCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ+C CYN WKTKRGGP
Subjt:  MILNLVLLVQNQAISEAPTPQPQPQL-----QHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGP

Query:  KCP
        KCP
Subjt:  KCP

A0A1S3CMR4 protein GAST1-like4.9e-4477.78Show/hide
Query:  MPKKQKM-VMLFLVMILNLVLLVQNQAISEAPTPQPQPQL-----QHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS
        M +KQ + ++LF+VM+LN VLL  NQAISEAPTPQPQ         HGVTEGSLQPQECG RCT RCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ+
Subjt:  MPKKQKM-VMLFLVMILNLVLLVQNQAISEAPTPQPQPQL-----QHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS

Query:  CHCYNDWKTKRGGPKCP
        C CYN WKTKRGGPKCP
Subjt:  CHCYNDWKTKRGGPKCP

A0A6J1E399 protein GAST13.6e-4781.9Show/hide
Query:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQPQLQH-----GVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSC
        M +KQ M++ FLVM LN VLLVQN AISEAPTPQPQP   H     GVTEGSLQPQECG RCT+RCSKTAFKKPCMFFCQKCCAKCLCVP+GTYGNKQSC
Subjt:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQPQLQH-----GVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSC

Query:  HCYNDWKTKRGGPKCP
         CYNDWKTKRGGPKCP
Subjt:  HCYNDWKTKRGGPKCP

A0A6J1EQZ6 protein GAST1-like1.0e-4171.79Show/hide
Query:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS
        M +KQ +   F V++LN +LL QN +ISEAPTPQP       P    GV+EGSL+P+ECGGRC  RCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS
Subjt:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQS

Query:  CHCYNDWKTKRGGPKCP
        C CYN+WKTKRGGPKCP
Subjt:  CHCYNDWKTKRGGPKCP

A0A6J1J049 protein GAST1-like4.9e-4474.58Show/hide
Query:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ-------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ
        M +KQ   M F VM+ N +LL QN +ISEAPTPQPQ       P   HGVTEGSL+P+ECGGRC  RCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ
Subjt:  MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQ-------PQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQ

Query:  SCHCYNDWKTKRGGPKCP
        SC CYN+WKTKRGGPKCP
Subjt:  SCHCYNDWKTKRGGPKCP

SwissProt top hitse value%identityAlignment
P27057 Protein GAST11.4e-3262.39Show/hide
Query:  MLFLVMILNLVLLVQNQAISEAPTPQPQPQLQ------HGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWK
        M  ++ +L +V L QNQ +S A   + + Q Q      +GV+EG L PQ+C  +CT RCSKT++KKPCMFFCQKCCAKCLCVP GTYGNKQSC CYN+WK
Subjt:  MLFLVMILNLVLLVQNQAISEAPTPQPQPQLQ------HGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWK

Query:  TKRGGPKCP
        TKRGGPKCP
Subjt:  TKRGGPKCP

P47926 Protein RSI-18.3e-2570.42Show/hide
Query:  VTEG--SLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP
        V EG   L+P +C  RCT RCS T+ KKPCMFFCQKCCA CLCVP G YGNKQSC CYN+WKT+ G PKCP
Subjt:  VTEG--SLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP

Q6GKX7 Gibberellin-regulated protein 129.2e-2448.57Show/hide
Query:  MVMLFLVMILNLVLLVQNQAISEAPTPQPQPQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRG
        M ++ + +I +L+   Q     E  +    P +     EGSL+P+EC   C  RCS T+ +KPC+FFC KCC KCLCVP GTYG+K+ C CYN+W TK G
Subjt:  MVMLFLVMILNLVLLVQNQAISEAPTPQPQPQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRG

Query:  GPKCP
        GPKCP
Subjt:  GPKCP

Q6NMQ7 Gibberellin-regulated protein 61.4e-2775.76Show/hide
Query:  GSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP
        GSL+  +CGG+CT RCS T + KPCMFFCQKCCAKCLCVP GTYGNKQ C CYN+WKT++GGPKCP
Subjt:  GSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP

Q84J95 Gibberellin-regulated protein 56.4e-2569.7Show/hide
Query:  GSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP
        G L+PQ+C  +C+ RCS T+ KKPCMFFC KCC KCLCVP GT+GNKQ+C CYN+WKTK G PKCP
Subjt:  GSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP

Arabidopsis top hitse value%identityAlignment
AT1G74670.1 Gibberellin-regulated family protein9.7e-2975.76Show/hide
Query:  GSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP
        GSL+  +CGG+CT RCS T + KPCMFFCQKCCAKCLCVP GTYGNKQ C CYN+WKT++GGPKCP
Subjt:  GSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP

AT2G30810.1 Gibberellin-regulated family protein6.5e-2548.57Show/hide
Query:  MVMLFLVMILNLVLLVQNQAISEAPTPQPQPQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRG
        M ++ + +I +L+   Q     E  +    P +     EGSL+P+EC   C  RCS T+ +KPC+FFC KCC KCLCVP GTYG+K+ C CYN+W TK G
Subjt:  MVMLFLVMILNLVLLVQNQAISEAPTPQPQPQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRG

Query:  GPKCP
        GPKCP
Subjt:  GPKCP

AT3G02885.1 GAST1 protein homolog 54.5e-2669.7Show/hide
Query:  GSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP
        G L+PQ+C  +C+ RCS T+ KKPCMFFC KCC KCLCVP GT+GNKQ+C CYN+WKTK G PKCP
Subjt:  GSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP

AT3G10185.1 Gibberellin-regulated family protein1.9e-2450Show/hide
Query:  VMLFLVMILNLVLLVQNQAI----SEAPTPQPQPQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKT
        +++F +++L+L+L      +    +E  T    P L            ECG RC +RCS T +KKPC+FFC KCC KCLCVP GTYGNKQ C CYN+WKT
Subjt:  VMLFLVMILNLVLLVQNQAI----SEAPTPQPQPQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKT

Query:  KRGGPKCP
        K GGPKCP
Subjt:  KRGGPKCP

AT5G15230.1 GAST1 protein homolog 45.2e-2247.47Show/hide
Query:  VMILNLVLLVQNQAISEAPTPQPQPQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP
        + +L L++L   Q +  A +       Q     GSL+  +C   C  RC KT + K C+ FC KCC KCLCVP G YGNKQ C CYN+WKT+ GGPKCP
Subjt:  VMILNLVLLVQNQAISEAPTPQPQPQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAGAAGCAAAAAATGGTGATGTTGTTTCTAGTTATGATTCTCAACTTGGTTCTCTTAGTACAAAATCAAGCCATTAGTGAAGCTCCCACACCACAGCCACAACC
TCAGCTTCAGCATGGAGTCACTGAAGGCAGCCTTCAACCTCAAGAGTGCGGAGGTCGATGCACGGAAAGATGCTCGAAAACAGCGTTCAAGAAGCCATGCATGTTCTTCT
GCCAAAAGTGTTGTGCTAAGTGCTTGTGTGTGCCATATGGGACTTATGGCAACAAGCAATCTTGTCACTGCTACAATGACTGGAAGACCAAAAGAGGAGGCCCAAAATGC
CCTTGA
mRNA sequenceShow/hide mRNA sequence
CTCAATCATCAATACCTTCTCTCTCTCATCTCTCACTTTTGCAATGCCCAAGAAGCAAAAAATGGTGATGTTGTTTCTAGTTATGATTCTCAACTTGGTTCTCTTAGTAC
AAAATCAAGCCATTAGTGAAGCTCCCACACCACAGCCACAACCTCAGCTTCAGCATGGAGTCACTGAAGGCAGCCTTCAACCTCAAGAGTGCGGAGGTCGATGCACGGAA
AGATGCTCGAAAACAGCGTTCAAGAAGCCATGCATGTTCTTCTGCCAAAAGTGTTGTGCTAAGTGCTTGTGTGTGCCATATGGGACTTATGGCAACAAGCAATCTTGTCA
CTGCTACAATGACTGGAAGACCAAAAGAGGAGGCCCAAAATGCCCTTGAAATTTTCACAACCCCCTCTATTTTTTACTTTCCTATTTTGAAGTTTGAATTACTATTATCA
AATCATTGTTAAATTATTATGTAATTAGTTAAAGTAATTGTCATGCATCTTTAATTAAAAGATTAAATTATTTTTGTAAAGAAATTAAAGGATTAAGTA
Protein sequenceShow/hide protein sequence
MPKKQKMVMLFLVMILNLVLLVQNQAISEAPTPQPQPQLQHGVTEGSLQPQECGGRCTERCSKTAFKKPCMFFCQKCCAKCLCVPYGTYGNKQSCHCYNDWKTKRGGPKC
P