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Sed0005080 (gene) of Chayote v1 genome

Gene IDSed0005080
OrganismSechium edule (Chayote v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationLG01:8194772..8195179
RNA-Seq ExpressionSed0005080
SyntenySed0005080
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004153928.3 RING-H2 finger protein ATL67 [Cucumis sativus]1.4e-2350.4Show/hide
Query:  PCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSC--EGGDLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFH
        P P PP  SP +LP +   L T V  LL +++F  I ++ TKRS   +G + ++ L+IEAP+F Y    E GE+EC ICL  +E+GE+ RK+ TCGHVFH
Subjt:  PCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSC--EGGDLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFH

Query:  RACIDRWFKVERTCPLCRSCVCVVV
        + CIDRWFKV   CP+CR+ VC+VV
Subjt:  RACIDRWFKVERTCPLCRSCVCVVV

XP_008457566.1 PREDICTED: RING-H2 finger protein ATL64-like [Cucumis melo]1.1e-2348.89Show/hide
Query:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGGD---LAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYR
        +L  +L  PP P PP  SP VLP   E L    + LL VLI  +I ++  KRS +  +   L++ ++I+AP+F Y  D +  E+EC ICL  +E+GE+ R
Subjt:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGGD---LAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYR

Query:  KVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV
        K+ TCGHVFH+ CIDRWF VE  CPLCR+ VCVVV
Subjt:  KVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV

XP_008457567.1 PREDICTED: RING-H2 finger protein ATL63-like [Cucumis melo]2.2e-2450Show/hide
Query:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGG--DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRK
        +L  +L  PP P PP  SP VLP   E L    +FLL VLI  +I ++  KRS +    +L++ L I+AP+F YG D +  E+EC ICL  +E+GE+ RK
Subjt:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGG--DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRK

Query:  VVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVVHR
        + TCGH FH+ CIDRWF VE  CPLCR+  CVVV R
Subjt:  VVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVVHR

XP_011648512.2 RING-H2 finger protein ATL79 [Cucumis sativus]2.8e-2452Show/hide
Query:  PCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSC--EGGDLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFH
        P P PP  SP +LP +   L T V  LL +++F  I ++ TKRS   +G + +E L+IEAP+F Y    EG E+ECVICL  +E+GE+ RK+ TCGHVFH
Subjt:  PCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSC--EGGDLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFH

Query:  RACIDRWFKVERTCPLCRSCVCVVV
        + CIDRWFKV   CP+CR+ VC+VV
Subjt:  RACIDRWFKVERTCPLCRSCVCVVV

XP_011659858.1 E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]3.3e-2552Show/hide
Query:  PCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGG--DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFH
        P P PP  SP +LP +   L T +  LL +++F  I ++ TKRS +    +L+E L+IEAP+F Y  + EGGE+EC ICL  +E+GE+ RK+ TCGHVFH
Subjt:  PCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGG--DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFH

Query:  RACIDRWFKVERTCPLCRSCVCVVV
        + CIDRWFKV   CP+CR+ VCVVV
Subjt:  RACIDRWFKVERTCPLCRSCVCVVV

TrEMBL top hitse value%identityAlignment
A0A1S3C6H2 RING-type E3 ubiquitin transferase5.2e-2448.89Show/hide
Query:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGGD---LAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYR
        +L  +L  PP P PP  SP VLP   E L    + LL VLI  +I ++  KRS +  +   L++ ++I+AP+F Y  D +  E+EC ICL  +E+GE+ R
Subjt:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGGD---LAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYR

Query:  KVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV
        K+ TCGHVFH+ CIDRWF VE  CPLCR+ VCVVV
Subjt:  KVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV

A0A1S3C741 RING-type E3 ubiquitin transferase1.0e-2450Show/hide
Query:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGG--DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRK
        +L  +L  PP P PP  SP VLP   E L    +FLL VLI  +I ++  KRS +    +L++ L I+AP+F YG D +  E+EC ICL  +E+GE+ RK
Subjt:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGG--DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRK

Query:  VVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVVHR
        + TCGH FH+ CIDRWF VE  CPLCR+  CVVV R
Subjt:  VVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVVHR

A0A5A7U2S7 RING-type E3 ubiquitin transferase8.9e-2454.81Show/hide
Query:  LFLLFVLIFWLIKVIDTKRSCEGG---DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCV
        +FLLFVL+  +I ++  K+S +      L+E L+I+AP+F YG DHE  E+EC ICL  +E+GE+ RK+ TCGHVFH+ CIDRWF VE  CPLCR+ +CV
Subjt:  LFLLFVLIFWLIKVIDTKRSCEGG---DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCV

Query:  VVHR
        VV R
Subjt:  VVHR

A0A5D3BEE2 RING-type E3 ubiquitin transferase5.2e-2448.89Show/hide
Query:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGGD---LAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYR
        +L  +L  PP P PP  SP VLP   E L    + LL VLI  +I ++  KRS +  +   L++ ++I+AP+F Y  D +  E+EC ICL  +E+GE+ R
Subjt:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGGD---LAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYR

Query:  KVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV
        K+ TCGHVFH+ CIDRWF VE  CPLCR+ VCVVV
Subjt:  KVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV

A0A5D3BG26 RING-type E3 ubiquitin transferase1.0e-2450Show/hide
Query:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGG--DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRK
        +L  +L  PP P PP  SP VLP   E L    +FLL VLI  +I ++  KRS +    +L++ L I+AP+F YG D +  E+EC ICL  +E+GE+ RK
Subjt:  MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGG--DLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRK

Query:  VVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVVHR
        + TCGH FH+ CIDRWF VE  CPLCR+  CVVV R
Subjt:  VVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVVHR

SwissProt top hitse value%identityAlignment
E9QAU8 E3 ubiquitin-protein ligase RNF1652.4e-1049.12Show/hide
Query:  GKDHEGGE----KECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCR
        GK  EG E    ++C ICLSMLEDGE+ R+ + C H+FH+ C+D+W  + + CP+CR
Subjt:  GKDHEGGE----KECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCR

Q6ZSG1 E3 ubiquitin-protein ligase RNF1652.4e-1049.12Show/hide
Query:  GKDHEGGE----KECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCR
        GK  EG E    ++C ICLSMLEDGE+ R+ + C H+FH+ C+D+W  + + CP+CR
Subjt:  GKDHEGGE----KECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCR

Q9LUZ9 RING-H2 finger protein ATL632.2e-1149.25Show/hide
Query:  PVFCY--GKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV
        P+F Y   ++ E  E+ECVICL + E G+  RK+  CGH FH  CID W     TCPLCRS V   V
Subjt:  PVFCY--GKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV

Q9LZJ6 RING-H2 finger protein ATL57.5e-1250Show/hide
Query:  PVFCYG-KDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCV
        P+F Y  K HE   +EC +CLS  E+ +E R +  CGHVFH  CID WF+   +CPLCR+ V
Subjt:  PVFCYG-KDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCV

Q9SRM0 RING-H2 finger protein ATL662.2e-1139.29Show/hide
Query:  DTKRSCEGGDLAEALEIEAPVFCYGKD--HEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCV
        D    C  G L  A     PV    ++   E  EKEC ICL   E+GE+ + +  C H +H  C+DRW K E +CPLCR  + V
Subjt:  DTKRSCEGGDLAEALEIEAPVFCYGKD--HEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCV

Arabidopsis top hitse value%identityAlignment
AT2G42350.1 RING/U-box superfamily protein2.9e-1140.68Show/hide
Query:  PVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRS
        P F  G  ++    EC +CLS+LE+ +  R +  C HVFH +C+D W   + TCP+CR+
Subjt:  PVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRS

AT2G47560.1 RING/U-box superfamily protein5.0e-1141.1Show/hide
Query:  LAEALEIEAPVFCYGKDH---EGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCV
        L +A+  + P+F Y   +      ++EC +CLS  E+ +E R +  CGH FH  CID WF+   TCPLCR+ V
Subjt:  LAEALEIEAPVFCYGKDH---EGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCV

AT3G11110.1 RING/U-box superfamily protein1.6e-1239.29Show/hide
Query:  DTKRSCEGGDLAEALEIEAPVFCYGKD--HEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCV
        D    C  G L  A     PV    ++   E  EKEC ICL   E+GE+ + +  C H +H  C+DRW K E +CPLCR  + V
Subjt:  DTKRSCEGGDLAEALEIEAPVFCYGKD--HEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCV

AT3G62690.1 AtL55.3e-1350Show/hide
Query:  PVFCYG-KDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCV
        P+F Y  K HE   +EC +CLS  E+ +E R +  CGHVFH  CID WF+   +CPLCR+ V
Subjt:  PVFCYG-KDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCV

AT5G58580.1 TOXICOS EN LEVADURA 631.6e-1249.25Show/hide
Query:  PVFCY--GKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV
        P+F Y   ++ E  E+ECVICL + E G+  RK+  CGH FH  CID W     TCPLCRS V   V
Subjt:  PVFCY--GKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRACIDRWFKVERTCPLCRSCVCVVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCGGCTAATTCTTTCATCTCCGCCGTGTCCACCACCGCCGCCGTCGTCGCCTTTTGTACTGCCTCCATACGCTGAGCATTTGGCTACGGCTGTGCTATTCCTGCT
CTTTGTACTCATTTTCTGGCTCATCAAAGTAATCGACACGAAAAGGAGCTGCGAGGGCGGAGACTTGGCGGAGGCGTTGGAGATAGAAGCGCCGGTGTTCTGTTACGGTA
AAGATCACGAGGGCGGAGAAAAAGAATGTGTGATTTGCCTTAGCATGCTTGAAGATGGAGAAGAGTATAGAAAAGTGGTCACGTGCGGTCACGTGTTTCATAGGGCTTGT
ATTGACCGGTGGTTCAAGGTGGAGCGGACCTGCCCGCTTTGCCGGAGCTGTGTTTGTGTTGTTGTTCATCGTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCGGCTAATTCTTTCATCTCCGCCGTGTCCACCACCGCCGCCGTCGTCGCCTTTTGTACTGCCTCCATACGCTGAGCATTTGGCTACGGCTGTGCTATTCCTGCT
CTTTGTACTCATTTTCTGGCTCATCAAAGTAATCGACACGAAAAGGAGCTGCGAGGGCGGAGACTTGGCGGAGGCGTTGGAGATAGAAGCGCCGGTGTTCTGTTACGGTA
AAGATCACGAGGGCGGAGAAAAAGAATGTGTGATTTGCCTTAGCATGCTTGAAGATGGAGAAGAGTATAGAAAAGTGGTCACGTGCGGTCACGTGTTTCATAGGGCTTGT
ATTGACCGGTGGTTCAAGGTGGAGCGGACCTGCCCGCTTTGCCGGAGCTGTGTTTGTGTTGTTGTTCATCGTCATTGA
Protein sequenceShow/hide protein sequence
MLRLILSSPPCPPPPPSSPFVLPPYAEHLATAVLFLLFVLIFWLIKVIDTKRSCEGGDLAEALEIEAPVFCYGKDHEGGEKECVICLSMLEDGEEYRKVVTCGHVFHRAC
IDRWFKVERTCPLCRSCVCVVVHRH