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Sed0005101 (gene) of Chayote v1 genome

Gene IDSed0005101
OrganismSechium edule (Chayote v1)
DescriptionATP-dependent RNA helicase
Genome locationLG12:32361187..32364576
RNA-Seq ExpressionSed0005101
SyntenySed0005101
Gene Ontology termsGO:0009299 - mRNA transcription (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN65836.2 hypothetical protein Csa_019715 [Cucumis sativus]1.9e-4092.22Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELP YVKPMLSI++AKKAV+R LDNYNAKYIQT S+DPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
XP_004146334.1 uncharacterized protein LOC101202935 [Cucumis sativus]1.9e-4092.22Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELP YVKPMLSI++AKKAV+R LDNYNAKYIQT S+DPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
XP_022135438.1 uncharacterized protein LOC111007393 [Momordica charantia]3.2e-4091.11Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELPG+VKPMLSI+  KKAV+RGLDNYNAKYIQTGS+DPLLHVCFGGM+FSYLVALPEERRHL HQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
XP_022974229.1 uncharacterized protein LOC111472849 [Cucurbita maxima]8.4e-4192.22Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAM+QFFSEI+GLKVKELPGYVKPMLSI+ AKKAVQRGLDNYNAKYIQTGS+DPLLHVC+GGMI SYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
XP_038879762.1 uncharacterized protein LOC120071511 [Benincasa hispida]1.3e-4194.44Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEI+GLKVKELP YVKPMLSI+SAKKAVQRGLDNYNAKYIQTGS+DPL HVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
TrEMBL top hitse value%identityAlignment
A0A0A0LXD4 Uncharacterized protein9.1e-4192.22Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELP YVKPMLSI++AKKAV+R LDNYNAKYIQT S+DPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
A0A5D3DYB3 Uncharacterized protein1.3e-3990Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELP YVKPMLSI++AKK VQR LDNY+AKYIQT S+DPL HVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
A0A6J1C4T8 uncharacterized protein LOC1110073931.6e-4091.11Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAMKQFFSEIKGLKVKELPG+VKPMLSI+  KKAV+RGLDNYNAKYIQTGS+DPLLHVCFGGM+FSYLVALPEERRHL HQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
A0A6J1F109 uncharacterized protein LOC1114411495.9e-4088.89Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAM+QFFSEI+GLKVKELPGYVKPML+I+S KKAVQRGLDNYNAKYIQT S+DPLLHVC+GGMI SYL+ALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
A0A6J1IH01 uncharacterized protein LOC1114728494.1e-4192.22Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MAM+QFFSEI+GLKVKELPGYVKPMLSI+ AKKAVQRGLDNYNAKYIQTGS+DPLLHVC+GGMI SYLVALPEERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30010.1 unknown protein5.6e-3572.22Show/hide
Query:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH
        MA+++ +SEI+G KV ELPGY+K   S+E+ K +V+RGLDNYN KYIQT SVDP+LH+CF GM FSYLVALP ERRHLEHQQHAKEHGGH
Subjt:  MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGAAGCAATTCTTCTCCGAAATCAAGGGCTTGAAGGTCAAGGAGCTGCCGGGATACGTGAAGCCGATGCTCTCCATTGAATCGGCGAAGAAGGCAGTGCAGAG
AGGGCTCGACAATTACAACGCTAAGTATATCCAGACCGGCTCTGTTGATCCTCTCTTGCATGTCTGCTTTGGCGGTATGATCTTTTCCTACCTCGTTGCGCTCCCTGAGG
AACGGCGCCACCTTGAACACCAGCAACACGCCAAAGAGCACGGTGGCCATTGA
mRNA sequenceShow/hide mRNA sequence
CGCCGTGGAATAATTCTTTCGCCTGTTCAAACGCTTCTTCTCAAGTTCCGATCTCGATCTTCAATTCCAGTTTTAGGGTTCGGATTTCTCAGCAGAGATGGCGATGAAGC
AATTCTTCTCCGAAATCAAGGGCTTGAAGGTCAAGGAGCTGCCGGGATACGTGAAGCCGATGCTCTCCATTGAATCGGCGAAGAAGGCAGTGCAGAGAGGGCTCGACAAT
TACAACGCTAAGTATATCCAGACCGGCTCTGTTGATCCTCTCTTGCATGTCTGCTTTGGCGGTATGATCTTTTCCTACCTCGTTGCGCTCCCTGAGGAACGGCGCCACCT
TGAACACCAGCAACACGCCAAAGAGCACGGTGGCCATTGATTGAGTTCTTCATCTGTTGAGGCTCTATGTGCCTCAAAGGTGTTTCTGGTCAATAATTTGTTTCCTGATT
GCTATTGTATCTTAGTTTTACTGGCTGAAACTTGCTATTAATTTCTTTTACACAGTGCCAGAGGAAATAAACAGACTTTTCTGTTAGTTTTTAACCATATGTGCAACCGT
TTTGGTCACAGTACAAGTTCATGGATGTTTTGTTTACTTTCTTTCTTGATTCTTCCAATGAATCTGTACTAGCTTGTGACCCCTTTTTGGGCAAATTAGGCTATTCATCA
TTTTCTTATTTTGAGCTCTA
Protein sequenceShow/hide protein sequence
MAMKQFFSEIKGLKVKELPGYVKPMLSIESAKKAVQRGLDNYNAKYIQTGSVDPLLHVCFGGMIFSYLVALPEERRHLEHQQHAKEHGGH