CuGenDBv2

Gene ID	Sed0005115
Organism	Sechium edule (Chayote v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	LG14:20204575..20204856
RNA-Seq Expression	Sed0005115
Synteny	Sed0005115
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]

2.5e-35

83.33

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.5e-35

83.33

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

KAA0062322.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.5e-35

83.33

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.5e-35

83.33

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

XP_008456214.1 PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]

9.3e-35

82.22

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VP QV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A+++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C2T7 uncharacterized protein LOC103496217

4.5e-35

82.22

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VP QV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A+++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

A0A5A7SLT1 Putative copia-type polyprotein

1.2e-35

83.33

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-35

83.33

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-35

83.33

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-35

83.33

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MANNN+VPFQV RLTKENYSSWCIRMKALLGSQDVW+IV  GY+EPE+ A ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKISGAT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

7.9e-24

54.44

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Query:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT
        MA+NN VPFQV  LTK NY +W +RMKA+LG+ DVWEIV++G+ EPEN  ++S  Q++ L+ +RK+D+KAL +I+Q +D+  FEK+  AT
Subjt:  MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGAT

Sequences

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CDS sequence

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ATGGCAAACAACAATATGGTTCCTTTCCAAGTGACTCGCTTGACGAAGGAAAATTATAGTAGTTGGTGCATACGAATGAAAGCACTACTTGGTTCACAAGATGTTTGGGA
AATTGTTGATAGAGGCTATGACGAGCCCGAAAATGGTGCCACCATAAGTCATGCTCAAAGAGAAGTTTTGCAAAGTACTAGAAAGAAAGATCAAAAGGCACTCACCATTA
TTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTCTGGAGCAACTATTGAGACGTAA

mRNA sequence

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Protein sequence

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MANNNMVPFQVTRLTKENYSSWCIRMKALLGSQDVWEIVDRGYDEPENGATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKISGATIET

Sed0005115 (gene) of Chayote v1 genome