CuGenDBv2

Gene ID	Sed0005117
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L20, chloroplastic
Genome location	LG14:11107788..11108141
RNA-Seq Expression	Sed0005117
Synteny	Sed0005117
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009326012.1 ribosomal protein L20 [Citrullus lanatus]

3.3e-33

76.07

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWI RINAVIR+NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

YP_009560858.1 ribosomal protein L20 [Trichosanthes kirilowii]

1.9e-33

76.92

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWITRINAVIR NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

YP_009751676.1 ribosomal protein L20 [Hodgsonia heteroclita]

1.1e-33

76.92

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWITRINAVIR NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

YP_009752266.1 ribosomal protein L20 [Trichosanthes baviensis]

1.9e-33

76.92

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWITRINAVIR NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

YP_009752519.1 ribosomal protein L20 [Trichosanthes tubiflora]

8.6e-34

76.92

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWITRINAVIR+NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

TrEMBL top hits

e value

%identity

Alignment

A0A6H0EQD1 50S ribosomal protein L20, chloroplastic

9.3e-34

76.92

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWITRINAVIR NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

A0A6H0ERB9 50S ribosomal protein L20, chloroplastic

9.3e-34

76.92

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWITRINAVIR NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

A0A6H0ES93 50S ribosomal protein L20, chloroplastic

5.4e-34

76.92

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWITRINAVIR NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

A0A6H0EST1 50S ribosomal protein L20, chloroplastic

4.2e-34

76.92

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWITRINAVIR+NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

A0A6M3S4F6 50S ribosomal protein L20, chloroplastic

9.3e-34

76.92

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWITRINAVIR NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

SwissProt top hits

e value

%identity

Alignment

A6MM59 50S ribosomal protein L20, chloroplastic

1.4e-31

67.52

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNKLF----------------LNRKILAQI
        MTRI+R YIA+RRR KI LF S+FRG+HSRLTR  TQQKIRAL SA+RDRG+QKR F++LWITRINAVIR+N++F                LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNKLF----------------LNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AI NR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

B1NWH3 50S ribosomal protein L20, chloroplastic

1.9e-31

69.23

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIR------------NN----KLFLNRKILAQI
        MTRI+R YIA+RRR KI LF SSFRGAHSRLTR I QQKIRAL SA+RDR RQKRNF++LW+TRINAVIR            NN    +L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIR------------NN----KLFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISN+I+K
Subjt:  AILNRIFLYMISNEIIK

Q09G23 50S ribosomal protein L20, chloroplastic

9.9e-33

70.09

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRI+R YIA+RRR KI LF S+FRGAHSRLTR  TQQK+RAL SA+RDRGRQKRNF++LWITRINAVIR NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AI NR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

Q09WZ4 50S ribosomal protein L20, chloroplastic

3.7e-32

70.09

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSF+GA SRLTR ITQQKIRAL SA++DRGRQKR+F++LWITRINAVIR NK                L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNK----------------LFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEI+K
Subjt:  AILNRIFLYMISNEIIK

Q4VZJ4 50S ribosomal protein L20, chloroplastic

1.2e-35

75.21

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Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNN----------------KLFLNRKILAQI
        MTRIKR YIA+RRR KI LF SSFRGAHSRLTR ITQQKIRALASAYRDRGRQKRNF+QLWI RINAVIR+N                +L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNN----------------KLFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        AILNR  LYMISNEIIK
Subjt:  AILNRIFLYMISNEIIK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00660.1 ribosomal protein L20

3.6e-30

63.25

Show/hide

Query:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIR----------------NNKLFLNRKILAQI
        MTRIKR YIA+RRR K+ LF SSFRGAHSRLTR +TQQ+IRAL SA+RDRG++KR+F++LWITRINAVI                   +L LNRKILAQI
Subjt:  MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIR----------------NNKLFLNRKILAQI

Query:  AILNRIFLYMISNEIIK
        A+LNR  LY ISN+I K
Subjt:  AILNRIFLYMISNEIIK

Sequences

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CDS sequence

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ATGACTAGAATTAAACGAGCATATATAGCTCAGAGACGTAGAATAAAAATTTGTTTATTTGGATCAAGCTTTCGAGGGGCTCATTCACGACTTACTCGAAATATTACTCA
ACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCAACAGTTGTGGATCACTCGAATAAATGCAGTAATTCGAAATAATAAGT
TGTTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGGATTTTTCTTTATATGATTTCCAATGAGATCATAAAATAA

mRNA sequence

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Protein sequence

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MTRIKRAYIAQRRRIKICLFGSSFRGAHSRLTRNITQQKIRALASAYRDRGRQKRNFQQLWITRINAVIRNNKLFLNRKILAQIAILNRIFLYMISNEIIK

Sed0005117 (gene) of Chayote v1 genome