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Sed0005147 (gene) of Chayote v1 genome

Gene IDSed0005147
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG08:6738887..6739524
RNA-Seq ExpressionSed0005147
SyntenySed0005147
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3460068.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Gossypium australe]5.1e-0723.76Show/hide
Query:  MEEFMIMCWRIWNCRN--LEVKEVFKLSDATNQKTFYLPAYDWDYCKQYLLDFQSANNFLTHRTKKP---------------------------------
        + E+++MCWR+W  RN   +       S   N +T Y+         QY       +  L  + KKP                                 
Subjt:  MEEFMIMCWRIWNCRN--LEVKEVFKLSDATNQKTFYLPAYDWDYCKQYLLDFQSANNFLTHRTKKP---------------------------------

Query:  -KISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEKSICA
         + +G  D  + EA  V  G+   ++++ + IEIE+++L V+  L    H  S +G L+++IKSL  +F  + F       N +A++LAK+       C+
Subjt:  -KISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEKSICA

Query:  SW
        +W
Subjt:  SW

KAE8790782.1 Alanyl-tRNA synthetase [Hordeum vulgare]3.9e-0729.23Show/hide
Query:  MIMCWRIWNCRN---------------LEVKEVFKLSDATNQKTFYLPAYDW------------DYCKQYLLDFQSANNFLTHRTK------KPKISGII
        +++ W IW+ RN                  +E   L D   Q+   LP + W            D   + L +   A     ++T       KP   G+I
Subjt:  MIMCWRIWNCRN---------------LEVKEVFKLSDATNQKTFYLPAYDW------------DYCKQYLLDFQSANNFLTHRTK------KPKISGII

Query:  DFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEKSICASW
        D  IAEA+A+ +G+  A    F  + +ET++L +VNL NN+ + RS V  ++ EIK LA  F         R AN  AH L   RA   S+  SW
Subjt:  DFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEKSICASW

KAF7810508.1 putative ribonuclease H protein [Senna tora]7.8e-0840.4Show/hide
Query:  NNFLTHRTKKPKISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLA
        NN     T   KI G++D    EA+AV  GM LA  L    I++E +A +V++LL      RS +G+++E+I +L  NF  VSF W  R  N +AH LA
Subjt:  NNFLTHRTKKPKISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLA

KAF7825347.1 uncharacterized protein G2W53_016511 [Senna tora]1.2e-0840Show/hide
Query:  KISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKM
        KI      E+ EA AV+ GM++A+ L  Q+  +E   L ++N L + +   S +G ++  IKSL + F FVSF W  RDAN +A+KLA++
Subjt:  KISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKM

TVU03622.1 hypothetical protein EJB05_50809, partial [Eragrostis curvula]2.1e-0847.73Show/hide
Query:  ISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAK
        + GI D E+AEAMA R GM LA DL  Q+  + T+ L VV   N Q       G +V EIK+ A++F+ VSF   GR+AN  AH+LAK
Subjt:  ISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAK

TrEMBL top hitse value%identityAlignment
A0A2N9H585 RNase H domain-containing protein2.4e-0737.04Show/hide
Query:  EIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAK
        E+ EA AVR  ++L +DL  + ++IE ++L+++  L     C +  G L+ E K+LA+N +   F    RD N++AH LAK
Subjt:  EIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAK

A0A2N9HF86 RNase H domain-containing protein8.4e-0841.18Show/hide
Query:  EIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAF
        E  EA A R+   LA+DL F+ ++IE +++ +V  L N   C +  G LV + K+ A +FL V F    RD NS+AH LAK   F
Subjt:  EIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAF

A0A2N9J8S3 Uncharacterized protein1.4e-0737.93Show/hide
Query:  EIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEK
        E+ EA A R+   LA+D+ F+ ++IE +++ +VN L N   C +  G LV + K+ A +F  V F    RD N +AH L K   F K
Subjt:  EIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEK

A0A5B6US60 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0723.76Show/hide
Query:  MEEFMIMCWRIWNCRN--LEVKEVFKLSDATNQKTFYLPAYDWDYCKQYLLDFQSANNFLTHRTKKP---------------------------------
        + E+++MCWR+W  RN   +       S   N +T Y+         QY       +  L  + KKP                                 
Subjt:  MEEFMIMCWRIWNCRN--LEVKEVFKLSDATNQKTFYLPAYDWDYCKQYLLDFQSANNFLTHRTKKP---------------------------------

Query:  -KISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEKSICA
         + +G  D  + EA  V  G+   ++++ + IEIE+++L V+  L    H  S +G L+++IKSL  +F  + F       N +A++LAK+       C+
Subjt:  -KISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEKSICA

Query:  SW
        +W
Subjt:  SW

A0A5J9SXC3 RNase H domain-containing protein (Fragment)9.9e-0947.73Show/hide
Query:  ISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAK
        + GI D E+AEAMA R GM LA DL  Q+  + T+ L VV   N Q       G +V EIK+ A++F+ VSF   GR+AN  AH+LAK
Subjt:  ISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein3.3e-0433.33Show/hide
Query:  AEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEKSICAS
        AEA A+++ M  A+ LE   + + +++  +V+ LN+ +      G LV EI+S+   F  +SF +  R  NSIA   AK+     S+C S
Subjt:  AEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLNNQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEKSICAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGTTCATGATCATGTGTTGGAGGATTTGGAACTGTAGAAACCTGGAAGTCAAGGAGGTTTTTAAGCTCAGTGATGCTACTAATCAAAAGACCTTTTATTTGCC
TGCTTATGATTGGGATTATTGTAAGCAGTATCTTCTTGATTTTCAGTCAGCAAACAACTTTTTGACTCATAGGACGAAGAAGCCCAAAATTTCAGGGATTATAGATTTTG
AGATAGCGGAGGCAATGGCAGTACGTAATGGCATGGACCTTGCGATGGATCTCGAATTTCAAAGAATTGAAATTGAGACGAATGCTTTGCGTGTGGTAAATCTTCTCAAC
AACCAAATGCATTGTCGATCGAAAGTTGGAAGGCTTGTCGAAGAGATAAAAAGCTTAGCGAGAAACTTCTTGTTCGTGAGCTTTGCGTGGTGTGGACGAGATGCGAATTC
TATTGCTCACAAGCTAGCTAAGATGAGAGCTTTTGAGAAGAGTATTTGTGCGAGTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGTTCATGATCATGTGTTGGAGGATTTGGAACTGTAGAAACCTGGAAGTCAAGGAGGTTTTTAAGCTCAGTGATGCTACTAATCAAAAGACCTTTTATTTGCC
TGCTTATGATTGGGATTATTGTAAGCAGTATCTTCTTGATTTTCAGTCAGCAAACAACTTTTTGACTCATAGGACGAAGAAGCCCAAAATTTCAGGGATTATAGATTTTG
AGATAGCGGAGGCAATGGCAGTACGTAATGGCATGGACCTTGCGATGGATCTCGAATTTCAAAGAATTGAAATTGAGACGAATGCTTTGCGTGTGGTAAATCTTCTCAAC
AACCAAATGCATTGTCGATCGAAAGTTGGAAGGCTTGTCGAAGAGATAAAAAGCTTAGCGAGAAACTTCTTGTTCGTGAGCTTTGCGTGGTGTGGACGAGATGCGAATTC
TATTGCTCACAAGCTAGCTAAGATGAGAGCTTTTGAGAAGAGTATTTGTGCGAGTTGGTGA
Protein sequenceShow/hide protein sequence
MEEFMIMCWRIWNCRNLEVKEVFKLSDATNQKTFYLPAYDWDYCKQYLLDFQSANNFLTHRTKKPKISGIIDFEIAEAMAVRNGMDLAMDLEFQRIEIETNALRVVNLLN
NQMHCRSKVGRLVEEIKSLARNFLFVSFAWCGRDANSIAHKLAKMRAFEKSICASW