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Sed0005170 (gene) of Chayote v1 genome

Gene IDSed0005170
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG04:25590375..25590866
RNA-Seq ExpressionSed0005170
SyntenySed0005170
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8399913.1 hypothetical protein HHK36_015783 [Tetracentron sinense]3.0e-1234.67Show/hide
Query:  MLMCWRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNH
        ++  W IW  +N  IF     D      FAS        +LQD   A+ K        ++   +  +W+ P    YKIN D+A  L     G GII+ NH
Subjt:  MLMCWRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNH

Query:  FGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRV
         GEVM ++SK I+   +A++ EAMA REG+  A  LGF+ + +E D+++V
Subjt:  FGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRV

TXG48260.1 hypothetical protein EZV62_027554 [Acer yangbiense]4.6e-1334.38Show/hide
Query:  LMC---WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVR
        L+C   WRIW  RN  + +  + +  +  ++A   W     YL D ++A  +     N  L       KW PP+   +KINTDAA+N +  + G  +++R
Subjt:  LMC---WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVR

Query:  NHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRN
        N+ G VM SL + I      +I EAMAI +G+ LAV LG     +E +AL V N+++  N
Subjt:  NHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRN

TXG69190.1 hypothetical protein EZV62_004125 [Acer yangbiense]7.9e-1331.45Show/hide
Query:  WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEV
        WR+W  RN  ++ K     Q    F   DW     ++QD K A+    T     +       KW P    +YKINTDA ++      G G+++R+ +G V
Subjt:  WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEV

Query:  MFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPNRSE
        M SL +    +L  +  EA+A+  G  LA++ G     IE+D+L V NL+ + +  R+E
Subjt:  MFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPNRSE

XP_021858911.1 uncharacterized protein LOC110798082 [Spinacia oleracea]5.1e-1233.13Show/hide
Query:  MLMCWRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSP----LANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGII
        M++ W+ W+ RN   F K  +D  +A          C + +  L    G+F   L       +A+   T+ W PP    YK+NTDAAV   + R G G++
Subjt:  MLMCWRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSP----LANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGII

Query:  VRNHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPNRS
        VR+  G+VM +    IT   +A  AEA A+R G+    D G R +E+ETD   + +LL+ +   RS
Subjt:  VRNHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPNRS

XP_023880097.1 uncharacterized protein LOC111992470 [Quercus suber]3.9e-1237.09Show/hide
Query:  WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEV
        W +W+ RN   F  G    Q A   A+      ++Y +++K  R       + PL N      W PP+   YKINTD AV      CG G+++RN  G +
Subjt:  WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEV

Query:  MFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQ
        M S+SK I   L A   EA A+ EGV LA DLG + I +E+D+L V N ++
Subjt:  MFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQ

TrEMBL top hitse value%identityAlignment
A0A2N9H1N4 RNase H domain-containing protein5.0e-1333.54Show/hide
Query:  LMCWRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQ---YLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVR
        ++CW IW  RN          + + QQ    D    Q+    + + + A+ +       P  +S  T KWNPP    YK+N D A+       G G+I+R
Subjt:  LMCWRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQ---YLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVR

Query:  NHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNP
        NH GEVM SLS+   +  + E  EA A R  ++ A DLGF  I++E D+  V   L  R P
Subjt:  NHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNP

A0A5C7GUI2 RNase H domain-containing protein2.2e-1334.38Show/hide
Query:  LMC---WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVR
        L+C   WRIW  RN  + +  + +  +  ++A   W     YL D ++A  +     N  L       KW PP+   +KINTDAA+N +  + G  +++R
Subjt:  LMC---WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVR

Query:  NHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRN
        N+ G VM SL + I      +I EAMAI +G+ LAV LG     +E +AL V N+++  N
Subjt:  NHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRN

A0A5C7IIT4 Uncharacterized protein3.8e-1331.45Show/hide
Query:  WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEV
        WR+W  RN  ++ K     Q    F   DW     ++QD K A+    T     +       KW P    +YKINTDA ++      G G+++R+ +G V
Subjt:  WRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEV

Query:  MFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPNRSE
        M SL +    +L  +  EA+A+  G  LA++ G     IE+D+L V NL+ + +  R+E
Subjt:  MFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPNRSE

A0A7N2N391 RNase H domain-containing protein5.0e-1336.07Show/hide
Query:  LQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRW
        L D + A+   +  L S     L  ++W PP  LNYK+N DA +   +   GFG+++RN  GE M ++S     + N++ AEA+A R+ VE+A+DLGFR 
Subjt:  LQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRW

Query:  IEIETDALRVFNLLQTRNPNRS
        + +E D + V + + + + NR+
Subjt:  IEIETDALRVFNLLQTRNPNRS

A0A803PW06 Uncharacterized protein2.2e-1331.46Show/hide
Query:  MLMC--WRIWSGRNWAIF--------------TKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAV
        +++C  W IW  RN  I               +  L   Q+A+    Q ++ C  +      A G   T  ++PL  S +   W+PP     KIN DAAV
Subjt:  MLMC--WRIWSGRNWAIF--------------TKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAV

Query:  NLSKMRCGFGIIVRNHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPNRS
        N  K   G G I+R+H G V+ ++SKP+     ++  EA A+   +  A+ L      +ETDALRV + L   +PN S
Subjt:  NLSKMRCGFGIIVRNHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPNRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-0826.62Show/hide
Query:  MCWRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFG
        + WR+W  RN  +F     D  +  + A +D++            R +     + P      + +W  P     K NTDA   L   RCG G I+RN  G
Subjt:  MCWRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFG

Query:  EVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQT
         V++  ++ +    N   AE  A+R  V       ++ I  E+DA  + NLL +
Subjt:  EVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQT

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.1e-0427.27Show/hide
Query:  SLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPN
        S  T KW  P     K N D + +  +   G   I+RN  G  +             + AE  A+   ++ A DLG+R +E E D + V  L++ +  N
Subjt:  SLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEVMFSLSKPITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATGTGTTGGCGGATTTGGAGCGGCAGAAATTGGGCAATATTTACAAAAGGTTTGGTTGATCAACAAAAGGCACAACAGTTTGCATCCCAAGATTGGGATTTTTG
CCAGCAGTATTTGCAAGACTTGAAAATGGCTAGAGGCAAGTTTGCAACTTGCTTAAATTCTCCTTTGGCAAATTCTTTGAATACTAAAAAATGGAATCCCCCGAATTGCT
TAAATTACAAAATAAATACAGATGCTGCTGTGAATCTTTCAAAAATGAGATGTGGGTTTGGGATAATTGTCAGAAATCATTTTGGGGAGGTTATGTTTTCTCTTTCGAAG
CCGATAACATGGATTTTAAATGCTGAGATTGCAGAGGCCATGGCTATTCGTGAAGGTGTGGAACTTGCAGTGGATCTAGGCTTTAGGTGGATTGAGATTGAGACAGACGC
ATTACGAGTTTTCAATCTACTTCAAACGCGGAACCCAAATCGTTCGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAATGTGTTGGCGGATTTGGAGCGGCAGAAATTGGGCAATATTTACAAAAGGTTTGGTTGATCAACAAAAGGCACAACAGTTTGCATCCCAAGATTGGGATTTTTG
CCAGCAGTATTTGCAAGACTTGAAAATGGCTAGAGGCAAGTTTGCAACTTGCTTAAATTCTCCTTTGGCAAATTCTTTGAATACTAAAAAATGGAATCCCCCGAATTGCT
TAAATTACAAAATAAATACAGATGCTGCTGTGAATCTTTCAAAAATGAGATGTGGGTTTGGGATAATTGTCAGAAATCATTTTGGGGAGGTTATGTTTTCTCTTTCGAAG
CCGATAACATGGATTTTAAATGCTGAGATTGCAGAGGCCATGGCTATTCGTGAAGGTGTGGAACTTGCAGTGGATCTAGGCTTTAGGTGGATTGAGATTGAGACAGACGC
ATTACGAGTTTTCAATCTACTTCAAACGCGGAACCCAAATCGTTCGGAATAG
Protein sequenceShow/hide protein sequence
MLMCWRIWSGRNWAIFTKGLVDQQKAQQFASQDWDFCQQYLQDLKMARGKFATCLNSPLANSLNTKKWNPPNCLNYKINTDAAVNLSKMRCGFGIIVRNHFGEVMFSLSK
PITWILNAEIAEAMAIREGVELAVDLGFRWIEIETDALRVFNLLQTRNPNRSE