CuGenDBv2

Gene ID	Sed0005174
Organism	Sechium edule (Chayote v1)
Description	glycine-rich cell wall structural protein 2-like
Genome location	LG08:3659554..3660523
RNA-Seq Expression	Sed0005174
Synteny	Sed0005174
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589745.1 hypothetical protein SDJN03_15168, partial [Cucurbita argyrosperma subsp. sororia]

5.2e-40

77.89

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Query:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGSGS
        MASI SL VVCFLLS S IVSQ RVARKDLGL+LGGL GVG G G+G+GLG  GSGSGSGSGSGS SSSSSSSYSSSSGSGSGAGSEAGSYAGS AGSGS
Subjt:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGSGS

Query:  GSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN
        G       SGAGSEAGSYAGSRAGS                 GSGRN NGGSG GSGYGGGSGRGSGN GGEGYGEGHGYGEGRGYGGGN
Subjt:  GSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

XP_022921881.1 cell wall protein IFF6-like isoform X1 [Cucurbita moschata]

1.3e-38

75.51

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Query:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS
        MASI SL VVCFLLS S I+SQ RVARKDLGL+LGGL   G G+G GIGLGLGGSGSGSGSGSGSG      SSSSSSSYSSSSGSGSGAGSEAGSYAGS
Subjt:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS

Query:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN
         AGSGSG       SGAGSEAGSYAGSRAGSGSG                  N NGGSG GSGYGGGSGRGSGN GGEGYGEGHGYGEGRGYGGGN
Subjt:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

XP_023515817.1 cell wall protein IFF6-like isoform X1 [Cucurbita pepo subsp. pepo]

9.8e-39

76.02

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Query:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS
        MASI SL VVCFLLS S IVSQ RVARKDLGL+LGGL   G G+G GIGLGLGGSGSGSGSGSGSG      SSSSSSSYSSSSGSGSGAGSEAGSYAGS
Subjt:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS

Query:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN
         AGSGSG       SGAGSEAGSYAGSRAGS                  SGRN NGGSG GSGYGGGSGRGSGN GGEGYGEGHGYGEGRGYGGGN
Subjt:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

XP_023515818.1 putative glycine-rich cell wall structural protein 1 isoform X2 [Cucurbita pepo subsp. pepo]

2.3e-32

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Query:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGSGS
        MASI++++++  LL+LS IVS+ R+AR DLGL+   LGGVG G+G G+GLGLG    GSGSGSGSGSSS+SSS+SSSS SGS AGSEAGSYAGS+AGS +
Subjt:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGSGS

Query:  GSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN
        GSGSG   SGAGSEAGSYAGSRAGS                  SGRN NGGSG GSGYGGGSGRGSGN GGEGYGEGHGYGEGRGYGGGN
Subjt:  GSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

XP_023515819.1 putative glycine-rich cell wall structural protein 1 isoform X3 [Cucurbita pepo subsp. pepo]

2.8e-30

65.82

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Query:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS
        MASI SL VVCFLLS S IVSQ RVARKDLGL+LGGL   G G+G GIGLGLGGSGSGSGSGSGSG      SSSSSSSYSSSSGSGSGAGSEAGSYAGS
Subjt:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS

Query:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN
         AGS                                             SGRN NGGSG GSGYGGGSGRGSGN GGEGYGEGHGYGEGRGYGGGN
Subjt:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTK9 Uncharacterized protein

5.8e-29

65.8

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Query:  MASIQSLA-VVCFLLSLSFIVSQGRVARKDLGLNLGGLG-GVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGS
        MASI+SLA VVC LLS S I+S+GRVARKDLG++LGG+G G+GTG+G+GIG    GSGSGSGSGSGSGSSSSSSSYSSSS SGSGAGSEAGSYAGS+AGS
Subjt:  MASIQSLA-VVCFLLSLSFIVSQGRVARKDLGLNLGGLG-GVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGS

Query:  GSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSG-NDGGEGYGEGHGYGEGRGYGGGN
         +GSGSGG                                        N NGGSGYGSGYGGGSGRG G ND GEGYGEGHGYGEGRGYGGGN
Subjt:  GSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSG-NDGGEGYGEGHGYGEGRGYGGGN

A0A1S3B9N0 glycine-rich cell wall structural protein 2-like

1.1e-27

64.06

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Query:  MASIQSLA-VVCFLLSLSFIVSQGRVARKDLGLNLGGLG-GVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGS
        MASI+SLA VVC LLS S  +S+GRVARKDLG++LGGLG G+G G+G+GIG    GSGSGSGSGSGSGSSSSSSSYSSSS SGSGAGSEAGSYAGS+AGS
Subjt:  MASIQSLA-VVCFLLSLSFIVSQGRVARKDLGLNLGGLG-GVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGS

Query:  GSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN
         +GSGSGG                                        N NGGSGYGSGYGGGSGRG  N  GEGYGEGHGYGEG GYGGGN
Subjt:  GSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

A0A6J1E1M3 putative per-hexamer repeat protein 5 isoform X2

9.9e-29

65.31

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Query:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS
        MASI SL VVCFLLS S I+SQ RVARKDLGL+LGGL   G G+G GIGLGLGGSGSGSGSGSGSG      SSSSSSSYSSSSGSGSGAGSEAGSYAGS
Subjt:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS

Query:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN
         AGSGSG       SGAGSEAGSYAGSRAGSGS                                     G   +GGEGYGEGHGYGEGRGYGGGN
Subjt:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

A0A6J1E2L1 cell wall protein IFF6-like isoform X1

6.2e-39

75.51

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Query:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS
        MASI SL VVCFLLS S I+SQ RVARKDLGL+LGGL   G G+G GIGLGLGGSGSGSGSGSGSG      SSSSSSSYSSSSGSGSGAGSEAGSYAGS
Subjt:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS

Query:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN
         AGSGSG       SGAGSEAGSYAGSRAGSGSG                  N NGGSG GSGYGGGSGRGSGN GGEGYGEGHGYGEGRGYGGGN
Subjt:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

A0A6J1E521 putative glycine-rich cell wall structural protein 1 isoform X3

4.0e-30

65.31

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Query:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS
        MASI SL VVCFLLS S I+SQ RVARKDLGL+LGGL   G G+G GIGLGLGGSGSGSGSGSGSG      SSSSSSSYSSSSGSGSGAGSEAGSYAGS
Subjt:  MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSG------SSSSSSSYSSSSGSGSGAGSEAGSYAGS

Query:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN
         AGSGSG                                             N NGGSG GSGYGGGSGRGSGN GGEGYGEGHGYGEGRGYGGGN
Subjt:  HAGSGSGSGSGGGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G30450.1 glycine-rich protein

4.6e-10

58.88

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Query:  MASIQSLAVVCFLLSLSFI-VSQGRVARKDLGLNLGGLG-GVGTGLGVGIGLGLG---GSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSH
        MA  + L ++  ++  S + +++ R+ARKDLG++LGG+G G+G GLG+G+G G G   G+GSGSGSGS S SSSSSSS SSSSGSG  AGS AGS+AGS 
Subjt:  MASIQSLAVVCFLLSLSFI-VSQGRVARKDLGLNLGGLG-GVGTGLGVGIGLGLG---GSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSH

Query:  AGSGSGS
        AGSGSG+
Subjt:  AGSGSGS

AT4G30460.1 glycine-rich protein

1.5e-16

53.8

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Query:  SLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGSGSGSGSG
        SL ++  +L+ S +VS+ RVARKDLGL+   LGG+G G+G+GIG+G GGSGSG+G+GSGSG   SSSS SSS                    S S S SG
Subjt:  SLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGSGSGSGSG

Query:  GGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGG
        GG   AGSEAGSYAGS AGSGS           G R+GSGR    GSG G G+GGG G G G  GG G G G GYGEG GYGGG
Subjt:  GGRSGAGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGG

Sequences

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CDS sequence

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ATGGCTTCAATCCAGTCCCTTGCTGTTGTTTGTTTCTTACTCTCTTTGTCTTTCATTGTCTCCCAAGGCCGTGTGGCCAGAAAGGATCTCGGCCTCAACCTTGGAGGACT
CGGCGGAGTCGGAACTGGACTTGGAGTTGGAATTGGCTTAGGCTTAGGTGGAAGTGGATCGGGTTCCGGATCCGGGTCCGGATCAGGTTCGAGTTCTTCTTCATCGTCAT
ACTCCTCCAGCTCGGGCTCTGGGTCCGGAGCTGGGTCCGAAGCTGGATCCTATGCAGGTTCTCATGCAGGCTCAGGCTCAGGCTCAGGCTCGGGTGGAGGAAGGTCCGGA
GCTGGATCCGAAGCTGGATCCTACGCAGGTTCTAGGGCAGGCTCAGGTTCGGGTGAAGGAGGATCCGAAGCTGGATCGTACGCAGGTTCTCGGGCAGGTTCGGGTAGGAA
CAATAATGGAGGGTCTGGGTATGGTTCGGGATACGGAGGCGGTTCGGGCAGAGGAAGCGGAAACGACGGCGGTGAAGGCTATGGTGAAGGTCATGGATACGGCGAGGGTC
GTGGCTACGGCGGAGGCAACTGA

mRNA sequence

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AACAAAACCTTGAGAGACGTTATTATTATTATAATTACAACCCTTTGTTACACACACTCTTTTCAGTTATTGTTTTGTTGTTTAACCAAAATGGCTTCAATCCAGTCCCT
TGCTGTTGTTTGTTTCTTACTCTCTTTGTCTTTCATTGTCTCCCAAGGCCGTGTGGCCAGAAAGGATCTCGGCCTCAACCTTGGAGGACTCGGCGGAGTCGGAACTGGAC
TTGGAGTTGGAATTGGCTTAGGCTTAGGTGGAAGTGGATCGGGTTCCGGATCCGGGTCCGGATCAGGTTCGAGTTCTTCTTCATCGTCATACTCCTCCAGCTCGGGCTCT
GGGTCCGGAGCTGGGTCCGAAGCTGGATCCTATGCAGGTTCTCATGCAGGCTCAGGCTCAGGCTCAGGCTCGGGTGGAGGAAGGTCCGGAGCTGGATCCGAAGCTGGATC
CTACGCAGGTTCTAGGGCAGGCTCAGGTTCGGGTGAAGGAGGATCCGAAGCTGGATCGTACGCAGGTTCTCGGGCAGGTTCGGGTAGGAACAATAATGGAGGGTCTGGGT
ATGGTTCGGGATACGGAGGCGGTTCGGGCAGAGGAAGCGGAAACGACGGCGGTGAAGGCTATGGTGAAGGTCATGGATACGGCGAGGGTCGTGGCTACGGCGGAGGCAAC
TGACTACGTCGTAAAATATAAAAACATACAACGAATAATACGACGACGTATAGGAGTAGTAGATTCTGCATGTTGTCATAGTTGTGAAATTGTTCTAGTTGTGTGATGCA
TTTTATGTTTTTTCTTGTTCAGTTTGTTTGCGTTTTGTTTGGGTGTTAATTTATCTATATGTGTATGTTTCAGAATAATAATAATGCATGCAAATTTAGTTCATTTTATA
TGCCAAACATAGTTCTTCCTAAATAGGCTTTGAGCTGTTATACATATGATAAATACTTTGTTTTCTCTTAAAGAAAATATGTATGCATGC

Protein sequence

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MASIQSLAVVCFLLSLSFIVSQGRVARKDLGLNLGGLGGVGTGLGVGIGLGLGGSGSGSGSGSGSGSSSSSSSYSSSSGSGSGAGSEAGSYAGSHAGSGSGSGSGGGRSG
AGSEAGSYAGSRAGSGSGEGGSEAGSYAGSRAGSGRNNNGGSGYGSGYGGGSGRGSGNDGGEGYGEGHGYGEGRGYGGGN

Sed0005174 (gene) of Chayote v1 genome