; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0005229 (gene) of Chayote v1 genome

Gene IDSed0005229
OrganismSechium edule (Chayote v1)
DescriptionRibonucloprotein
Genome locationLG11:978378..980853
RNA-Seq ExpressionSed0005229
SyntenySed0005229
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0000470 - maturation of LSU-rRNA (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0031428 - box C/D snoRNP complex (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002415 - H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
IPR004037 - Ribosomal protein L7Ae conserved site
IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR018492 - Ribosomal protein L7Ae/L8/Nhp2 family
IPR029064 - 50S ribosomal protein L30e-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001235882.1 uncharacterized protein LOC100527424 [Glycine max]1.6e-6198.44Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGETVNPKAYPLADAQL+ITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_004488534.1 NHP2-like protein 1 [Cicer arietinum]9.4e-6298.44Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGETVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_014507758.1 NHP2-like protein 1 [Vigna radiata var. radiata]1.2e-6199.22Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        SCSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_027939083.1 NHP2-like protein 1 [Vigna unguiculata]5.5e-6299.22Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

XP_028188043.1 NHP2-like protein 1 [Glycine soja]1.6e-6198.44Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGETVNPKAYPLADAQL+ITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

TrEMBL top hitse value%identityAlignment
A0A0L9TR38 Ribonucloprotein6.0e-6299.22Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        SCSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A0S3R6U0 Ribonucloprotein6.0e-6299.22Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        SCSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A1S2XFE9 Ribonucloprotein4.6e-6298.44Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGETVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

A0A1S3UNW0 Ribonucloprotein6.0e-6299.22Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGE VNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        SCSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

I3SXG0 Ribonucloprotein4.6e-6298.44Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGETVNPKAYPLADAQLTITI+DLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVTTNEGSQLKSQIQQLKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

SwissProt top hitse value%identityAlignment
P55769 NHP2-like protein 11.6e-5178.91Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVT  EGSQLK QIQ ++ +IE+LL+
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

Q3B8S0 NHP2-like protein 11.6e-5178.91Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVT  EGSQLK QIQ ++ +IE+LL+
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

Q4R5C6 NHP2-like protein 11.6e-5178.91Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT   VNPKAYPLADA LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVT  EGSQLK QIQ ++ +IE+LL+
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

Q5XH16 NHP2-like protein 14.9e-5381.25Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT   VNPKAYPLADAQLT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVT  EGSQLK QIQ ++ AIE+LL+
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

Q6P8E9 NHP2-like protein 14.9e-5381.25Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT   VNPKAYPLADAQLT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EF+VMAAD EPLEI+LHLPLL EDKNVPYVFV SKQALGRACGV+RPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +C+VT  EGSQLK QIQ L+ +IE+LL+
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

Arabidopsis top hitse value%identityAlignment
AT4G12600.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein3.2e-6091.41Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRAC VTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

AT4G12600.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.5e-5263.93Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK------------------------
        MT E VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEF+VMAADTEPLEILLHLPLLAEDK                        
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDK------------------------

Query:  -------------------------------NVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLKDAIEKLLI
                                       NVPYVFVPSKQALGRAC VTRPVI+CSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  -------------------------------NVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLKDAIEKLLI

AT4G22380.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.3e-6192.19Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGE VNPKAYPLAD+QL+ITI+DLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

AT5G20160.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein7.7e-6292.97Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
        MTGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANEATKTLNRGISEFVVMAAD EPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI

Query:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI
        +CSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  SCSVTTNEGSQLKSQIQQLKDAIEKLLI

AT5G20160.2 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein7.5e-5774.38Show/hide
Query:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE--------------------------------ATKTLNRGISEFVVMAADTEPLEILLH
        MTGE VNPKAYPLAD+QL+ITILDLVQQA NYKQLKKGANE                                ATKTLNRGISEFVVMAAD EPLEILLH
Subjt:  MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANE--------------------------------ATKTLNRGISEFVVMAADTEPLEILLH

Query:  LPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLKDAIEKLLI
        LPLLAEDKNVPYVFVPSKQALGRACGVTRPVI+CSVT+NE SQLKSQIQ LKDAIEKLLI
Subjt:  LPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLKDAIEKLLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGAGAAACGGTGAATCCCAAAGCCTATCCATTGGCCGATGCACAGCTTACAATCACCATTCTTGATCTTGTTCAGCAAGCTGCTAATTACAAACAGCTCAAAAA
GGGCGCTAATGAAGCCACCAAGACCCTGAACAGAGGGATCTCGGAGTTTGTAGTTATGGCTGCCGACACTGAGCCGCTTGAGATTCTTCTGCATCTTCCTTTGTTGGCGG
AGGATAAGAATGTGCCCTACGTATTTGTCCCTTCAAAGCAAGCTCTCGGCCGAGCATGTGGAGTCACGAGACCTGTAATTTCGTGTTCCGTAACGACAAACGAAGGAAGC
CAATTGAAATCCCAGATACAGCAACTGAAGGATGCCATTGAGAAGCTGTTGATCTGA
mRNA sequenceShow/hide mRNA sequence
GTCAAGAATTTTGAAGCTCATAAACCCTAATAATTTTCTTTCCTTCGAATTTCGCTCACTGTATTAAAACCCTACGATTCGAAATGACAGGAGAAACGGTGAATCCCAAA
GCCTATCCATTGGCCGATGCACAGCTTACAATCACCATTCTTGATCTTGTTCAGCAAGCTGCTAATTACAAACAGCTCAAAAAGGGCGCTAATGAAGCCACCAAGACCCT
GAACAGAGGGATCTCGGAGTTTGTAGTTATGGCTGCCGACACTGAGCCGCTTGAGATTCTTCTGCATCTTCCTTTGTTGGCGGAGGATAAGAATGTGCCCTACGTATTTG
TCCCTTCAAAGCAAGCTCTCGGCCGAGCATGTGGAGTCACGAGACCTGTAATTTCGTGTTCCGTAACGACAAACGAAGGAAGCCAATTGAAATCCCAGATACAGCAACTG
AAGGATGCCATTGAGAAGCTGTTGATCTGAAATGTTATATTTCTATGATGATGGTATTCGGTATGACGGGCTTCTTTGATCGTGTCGTGGTCGCTTCTCTGGAGGCTTTG
ACTGAAGTTGTTGTGCAATTAGGAAGACTTTGTCTTGGTATTATTAACCTTATATATACGTTGAGCTGTTCTTTTTTTGTTATGTTGAGAGTGGAAAATGCTCGTACAAT
TTTATTGACAGTTTATTAAAGCTAATGATACCATTGAAGACGTGCATGGTTTGTTCATAAAAAA
Protein sequenceShow/hide protein sequence
MTGETVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGS
QLKSQIQQLKDAIEKLLI