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Sed0005241 (gene) of Chayote v1 genome

Gene IDSed0005241
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG01:57686994..57687236
RNA-Seq ExpressionSed0005241
SyntenySed0005241
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]6.2e-1156.96Show/hide
Query:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        MA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S S+AS  V
Subjt:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]6.2e-1156.96Show/hide
Query:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        MA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S S+AS  V
Subjt:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.2e-1156.96Show/hide
Query:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        MA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S S+AS  V
Subjt:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.2e-1156.96Show/hide
Query:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        MA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S S+AS  V
Subjt:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]6.2e-1156.96Show/hide
Query:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        MA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S S+AS  V
Subjt:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

TrEMBL top hitse value%identityAlignment
A0A5A7TYE9 Ty3-gypsy retrotransposon protein1.3e-0953.16Show/hide
Query:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        MA    +  MAE ERK+  +MK +EERD EI  L+ QM+ RETAESSQ+P  +  DKGKN + E QPQ  S S+AS  V
Subjt:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

A0A5A7V6H5 Ty3-gypsy retrotransposon protein1.3e-0953.16Show/hide
Query:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        MA    +  MAE ERK+  +MK +EERD EI  L+ QMQ RETAESSQ+P  +  DKGKN + + QPQ  S S+AS  V
Subjt:  MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.6e-0957.14Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        MAE ERK+  +MK +EERD EI  L+ QM+ RETAESSQ+P  +  DKGKN + E QPQ  S S+AS  V
Subjt:  MAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

A0A5D3CND6 Ty3-gypsy retrotransposon protein1.6e-0954.79Show/hide
Query:  DDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        D  M E ERK+  +MK +EERD EI  L+ QM+ RET ESSQ+P  + NDKG N + E QPQ  S S+AS LV
Subjt:  DDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

A0A5D3DK07 Ty3-gypsy retrotransposon protein1.6e-0958.57Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV
        MAE ERK+  +MK +EERD EIA LK+QM+  ETAESSQ+P  +  DKGKN + E QPQ  S S+AS  V
Subjt:  MAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGTGATGGAGGCGATGATCGAATGGCGGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTACCTCAAAAATCA
AATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCCACATGAGAGAGTCAATGATAAAGGAAAGAACCCTCTCCTTGAGGCACAACCACAACTGCACTCAGCCTCAA
TCGCTTCTTATCTCGTCCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGTGATGGAGGCGATGATCGAATGGCGGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTACCTCAAAAATCA
AATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCCACATGAGAGAGTCAATGATAAAGGAAAGAACCCTCTCCTTGAGGCACAACCACAACTGCACTCAGCCTCAA
TCGCTTCTTATCTCGTCCCATGA
Protein sequenceShow/hide protein sequence
MAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSPHERVNDKGKNPLLEAQPQLHSASIASYLVP