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Sed0005274 (gene) of Chayote v1 genome

Gene IDSed0005274
OrganismSechium edule (Chayote v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationLG07:42638882..42642092
RNA-Seq ExpressionSed0005274
SyntenySed0005274
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645904.1 hypothetical protein Csa_011859 [Cucumis sativus]7.1e-2966.67Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP-LTCLLIVLNNWHLNHDGEPSGYNDIKKSKCCKRNGFAV
        DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DA  R+ PDPAK PP  TC  + L NW          +  +  S    RNGFAV
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP-LTCLLIVLNNWHLNHDGEPSGYNDIKKSKCCKRNGFAV

Query:  SKVLLLNLEKV
         KV LLNL+KV
Subjt:  SKVLLLNLEKV

KAG7030269.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]7.4e-2692.19Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPPL
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAKAPP+
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPPL

XP_008463014.1 PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]7.4e-2676.62Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPPLTCLLIVLNNWHLN
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DA  R+ PDPAKAPP+  +  +   W L+
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPPLTCLLIVLNNWHLN

XP_022975420.1 uncharacterized protein LOC111474733 isoform X1 [Cucurbita maxima]9.6e-2693.65Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP

XP_023535777.1 uncharacterized protein LOC111797108 isoform X1 [Cucurbita pepo subsp. pepo]9.6e-2693.65Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP

TrEMBL top hitse value%identityAlignment
A0A0A0K6Y6 AvrRpt-cleavage domain-containing protein1.8e-3067.26Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP-LTCLLIVLNNWHLNHDGEPSGYNDIKKSKCCKRNGF
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DA  R+ PDPAK PP  TC  + L NW          +  +  S    RNGF
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP-LTCLLIVLNNWHLNHDGEPSGYNDIKKSKCCKRNGF

Query:  AVSKVLLLNLEKV
        AV KV LLNL+KV
Subjt:  AVSKVLLLNLEKV

A0A1S3CI83 RPM1-interacting protein 4-like isoform X13.6e-2676.62Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPPLTCLLIVLNNWHLN
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DA  R+ PDPAKAPP+  +  +   W L+
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPPLTCLLIVLNNWHLN

A0A6J1FE40 uncharacterized protein LOC1114432504.7e-2693.65Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP

A0A6J1ID15 uncharacterized protein LOC111474733 isoform X24.7e-2693.65Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP

A0A6J1IGN4 uncharacterized protein LOC111474733 isoform X14.7e-2693.65Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGK DSPGK+DAQ RSG DPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPP

SwissProt top hitse value%identityAlignment
O22633 Protein NOI48.2e-2075.38Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAKAPP
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGK  SPGK  +   +S G DP+K  P
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAKAPP

Q8GYN5 RPM1-interacting protein 43.9e-0646.67Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK
        +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G  V    +
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein2.4e-1989.36Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK
        M DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK

AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein2.2e-1260Show/hide
Query:  RPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK
        RPLPKFGEWDVNDP SAEGFTVIF KARD+KKT     +  +     +S  +P K
Subjt:  RPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAK

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein4.5e-2174.24Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAKAPPL
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGK  SPGK  +   +S G DP+K  P+
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAKAPPL

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein2.9e-2075Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAKAPPL
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGK  SPGK  +   +S G DP+K  P+
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAKAPPL

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein3.8e-2076.19Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAKAPP
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGK  SPGK  +   +S G DP+K  P
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGK-LDAQARS-GPDPAKAPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGACAAAGGTCGGCCATTACCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCGGCCGAGGGATTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAA
AACAGGCGGCAAAGTTGATTCACCAGGAAAACTTGATGCACAGGCAAGGTCTGGACCAGATCCTGCCAAGGCACCGCCTCTAACATGTCTGTTGATAGTATTAAATAATT
GGCATCTAAACCACGATGGGGAGCCTAGTGGTTATAATGATATTAAGAAATCAAAATGTTGTAAAAGAAATGGCTTTGCTGTATCCAAAGTCCTCCTGCTGAATCTTGAG
AAGGTTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGACAAAGGTCGGCCATTACCAAAATTTGGTGAGTGGGATGTTAATGATCCGACATCGGCCGAGGGATTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAA
AACAGGCGGCAAAGTTGATTCACCAGGAAAACTTGATGCACAGGCAAGGTCTGGACCAGATCCTGCCAAGGCACCGCCTCTAACATGTCTGTTGATAGTATTAAATAATT
GGCATCTAAACCACGATGGGGAGCCTAGTGGTTATAATGATATTAAGAAATCAAAATGTTGTAAAAGAAATGGCTTTGCTGTATCCAAAGTCCTCCTGCTGAATCTTGAG
AAGGTTCATTAA
Protein sequenceShow/hide protein sequence
MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKVDSPGKLDAQARSGPDPAKAPPLTCLLIVLNNWHLNHDGEPSGYNDIKKSKCCKRNGFAVSKVLLLNLE
KVH