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Sed0005282 (gene) of Chayote v1 genome

Gene IDSed0005282
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
Genome locationLG10:9220809..9221882
RNA-Seq ExpressionSed0005282
SyntenySed0005282
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]2.2e-3135.78Show/hide
Query:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAED
        M GP+CSGFGWN E +C+ AE++++D W+KSHPAAKGL +K FP+YD+LS++FGK+RA G+ ++    +GS+ + +  +   L DS +  +P    T   
Subjt:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAED

Query:  APVKGINNTLVRTQVGGSS-----SSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLAS
          V    + +   + G +S     SS+ KRKR   +   V VI   M+     LK I++W +E+RA+E  +  + + +L+++P L        M+ +  S
Subjt:  APVKGINNTLVRTQVGGSS-----SSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLAS

Query:  EFTMELFLSVPKKFKMDY
           +E FLS+P + K++Y
Subjt:  EFTMELFLSVPKKFKMDY

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]4.7e-2936.49Show/hide
Query:  GFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPY--TAEDAPVKGI
        GFGWN + KC+ AE+EV+D WVKSHP AKGL NKP PHYD+L+  FGK+RA G+      ++ SS    + E +  ++Q++Y+P PP   T EDA  + +
Subjt:  GFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPY--TAEDAPVKGI

Query:  NNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMELFLSVP
         NT       G+SS   KRKRS + S MV+V+   M++Q ++L+ ++ W  ++   +    +    +LK +P+L+   +   +  ++ +      FL VP
Subjt:  NNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMELFLSVP

Query:  KKFKMDYLKHL
         +FK  +   L
Subjt:  KKFKMDYLKHL

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]1.3e-2638.71Show/hide
Query:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPP-----Y
        M GP+CSGFGWN + KC+ AE+E +D WV+SHPAAKGL NKPFP+YD+ +++FGK+RA G+  +   ++GS+     EEF   D  +  +P         
Subjt:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPP-----Y

Query:  TAED--APVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDL
        + +D   P +GI++   RT   GS     K +R    S   +VI+DAM +Q   L++I+EW R     E+ +    +  L+ +P+L
Subjt:  TAED--APVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDL

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]8.8e-2835.65Show/hide
Query:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPP----YT
        M GP+C GFGWN ++KC+ AE+E++D WV+SHPAAKGL NK FP+YDEL+++FGK+RA G+ A+   ++GS+     EEF   D  +   P         
Subjt:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPP----YT

Query:  AEDAPVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEF
        ++D   +    T  RT   GS     KR+R        +VI+DAM +Q   L++I+EW R     E+ +    +  L+ +P+L         + ++ +  
Subjt:  AEDAPVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEF

Query:  TMELFLSVPKKFKMDY
         M+ FL +  + K+DY
Subjt:  TMELFLSVPKKFKMDY

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]1.6e-2936.24Show/hide
Query:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAED
        M G  CSGFGWN E +C++AE+E +D WVKSHPA KGL NK F ++D+L+++FGK+ A G GA++  ++ SS    + E  S DDSQE+          D
Subjt:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAED

Query:  APVKGINNTLVRTQVGGSSSSLGKRKRSH-HKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTM
              + T       G +S  G +++ H + S +V V ++AM      LK I+EWS++Q A E  L  + + +L ++P L        M  +  +    
Subjt:  APVKGINNTLVRTQVGGSSSSLGKRKRSH-HKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTM

Query:  ELFLSVPKKFKMDYLKHL
        E FLS+P   K++Y + L
Subjt:  ELFLSVPKKFKMDYLKHL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.1e-3135.78Show/hide
Query:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAED
        M GP+CSGFGWN E +C+ AE++++D W+KSHPAAKGL +K FP+YD+LS++FGK+RA G+ ++    +GS+ + +  +   L DS +  +P    T   
Subjt:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAED

Query:  APVKGINNTLVRTQVGGSS-----SSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLAS
          V    + +   + G +S     SS+ KRKR   +   V VI   M+     LK I++W +E+RA+E  +  + + +L+++P L        M+ +  S
Subjt:  APVKGINNTLVRTQVGGSS-----SSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLAS

Query:  EFTMELFLSVPKKFKMDY
           +E FLS+P + K++Y
Subjt:  EFTMELFLSVPKKFKMDY

A0A5A7U0H7 Retrotransposon protein1.1e-3135.78Show/hide
Query:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAED
        M GP+CSGFGWN E +C+ AE++++D W+KSHPAAKGL +K FP+YD+LS++FGK+RA G+ ++    +GS+ + +  +   L DS +  +P    T   
Subjt:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEE-FSLDDSQEYYVPIPPYTAED

Query:  APVKGINNTLVRTQVGGSS-----SSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLAS
          V    + +   + G +S     SS+ KRKR   +   V VI   M+     LK I++W +E+RA+E  +  + + +L+++P L        M+ +  S
Subjt:  APVKGINNTLVRTQVGGSS-----SSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLAS

Query:  EFTMELFLSVPKKFKMDY
           +E FLS+P + K++Y
Subjt:  EFTMELFLSVPKKFKMDY

A0A5D3BQP3 Retrotransposon protein1.4e-2633.5Show/hide
Query:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDA
        M GP CSGFGWN E KC+ AE++++D WV+SHPA KGL NKPFP+YDEL+++FG++RA G  A+   ++GS+  +  + F + D  E + P+     +  
Subjt:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDA

Query:  PVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMEL
              +   RT  G + SS  KRKR   +   V  +  A+      L++I+ WS    A +  +       L+ +P L     T   + +L+    +  
Subjt:  PVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMEL

Query:  FLSVPK
        F+ +P+
Subjt:  FLSVPK

A0A5D3DG22 Retrotransposon protein8.1e-2733.02Show/hide
Query:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDA
        M GP+CSGFGWN E +C+ AE++++D WVKSHPA KGL +K FP+YD+LS++FGK+RA G+ ++   ++GS+   +  +          +P+     ED 
Subjt:  MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDA

Query:  PVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMEL
        P      T+    V  S   +              VI   M+     LK I++W++E+RA+E  +  + + +L+++P+L     T  M+ +  S   +  
Subjt:  PVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMEL

Query:  FLSVPKKFKMDY
        FLS+P + K++Y
Subjt:  FLSVPKKFKMDY

A0A6J1DW73 uncharacterized protein LOC1110250182.3e-2936.49Show/hide
Query:  GFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPY--TAEDAPVKGI
        GFGWN + KC+ AE+EV+D WVKSHP AKGL NKP PHYD+L+  FGK+RA G+      ++ SS    + E +  ++Q++Y+P PP   T EDA  + +
Subjt:  GFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPY--TAEDAPVKGI

Query:  NNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMELFLSVP
         NT       G+SS   KRKRS + S MV+V+   M++Q ++L+ ++ W  ++   +    +    +LK +P+L+   +   +  ++ +      FL VP
Subjt:  NNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMELFLSVP

Query:  KKFKMDYLKHL
         +FK  +   L
Subjt:  KKFKMDYLKHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein2.4e-0742.11Show/hide
Query:  SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGA
        SGFGW+PE K  +A  EV+  ++K+HP  K +  +   H+++L  IFG   A GS A
Subjt:  SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGA

AT2G24960.1 unknown protein4.1e-0729.91Show/hide
Query:  GFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFG-------KERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDA
        GF W+     +SA+  V+D ++K HP A+    K  P Y++L  IF          R  GS AQ      +S T+  +E + D ++ ++ P   Y   D 
Subjt:  GFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFG-------KERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDA

Query:  PVKGINN
         V+ +NN
Subjt:  PVKGINN

AT2G24960.2 unknown protein1.2e-0631.88Show/hide
Query:  SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTE
        +GF W+     V A+ ++++ ++++HP A+    K  P Y  L FIFGKE + G   +L      S  E
Subjt:  SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTE

AT2G29880.1 unknown protein9.5e-0423.91Show/hide
Query:  SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDAPVKGIN
        SGFGW+P  K  +A  +V+  ++  HP    +    F  +++L  IF    A G+ A      G       E F  +D  +    +      D  V   N
Subjt:  SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDAPVKGIN

Query:  NTLVR----TQVGGSSSSLGKRKRS-HHKSAMVNVIEDAMQVQQSYLKVISE-WSREQRAIEATLHER----CLAELKNLPDLD
         TL +    T+    ++  G R  S +H  +   V+ + + V  + + +I +   R QR +E    E+        +K +PDL+
Subjt:  NTLVR----TQVGGSSSSLGKRKRS-HHKSAMVNVIEDAMQVQQSYLKVISE-WSREQRAIEATLHER----CLAELKNLPDLD

AT5G27260.1 unknown protein1.1e-0726.42Show/hide
Query:  SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGA--------QLQTEIGSS-RTELLEEF---------SLDDSQEY
        SGFGW+P  K  +A  EV+  ++K+HP  K L    F  +DEL  IFG+  A G  A         L    G + R E +++F         +  +S E+
Subjt:  SGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGA--------QLQTEIGSS-RTELLEEF---------SLDDSQEY

Query:  YVPIPPYTAEDAPVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQS-YLKVISEWSREQRAIEATLHERCLAELKNLPDLD
        Y P   +   ++P                   L  RKR+  + +     E  M V  S  L +I +    Q+   A         +K + DLD
Subjt:  YVPIPPYTAEDAPVKGINNTLVRTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQS-YLKVISEWSREQRAIEATLHERCLAELKNLPDLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGACCAACTTGTAGTGGATTTGGTTGGAATCCAGAACTAAAATGTGTTTCTGCTGAGCAGGAAGTTTATGACTATTGGGTAAAGTCTCACCCAGCTGCGAAAGG
ATTGAACAACAAGCCTTTTCCCCACTATGATGAGTTGTCCTTCATATTTGGTAAGGAACGTGCTGGTGGATCAGGTGCTCAGTTGCAAACTGAAATTGGATCAAGTCGAA
CAGAATTGTTGGAGGAGTTTTCTCTTGACGACTCTCAGGAGTATTATGTCCCCATCCCTCCTTACACTGCCGAAGATGCACCAGTAAAGGGGATTAACAATACACTTGTT
AGGACTCAGGTTGGTGGCTCTTCATCTAGTTTAGGCAAAAGGAAAAGAAGTCACCATAAATCAGCAATGGTGAATGTGATCGAAGATGCTATGCAAGTGCAACAATCATA
CCTGAAGGTTATTTCTGAGTGGTCGAGAGAACAACGTGCTATTGAAGCTACACTACATGAAAGATGTCTGGCCGAGCTAAAGAACCTCCCTGACCTTGATGGACCATTAT
TCACATATGCCATGAAGCAAGTTTTGGCTAGTGAATTCACTATGGAGTTATTCCTCTCTGTTCCAAAGAAGTTCAAGATGGATTACTTAAAACATTTGTAG
mRNA sequenceShow/hide mRNA sequence
GACATTTCGAGGAGGGTATCTCACACAATTGCAGATGATGATGAGAGAAAAAAATTCCAAGTTCTAATCTATCCACCGACACAATTGAAGGAAAAATACGATCATTAAAG
AAAACATACCAAGCAATTTCTGAAATGTTAGGACCAACTTGTAGTGGATTTGGTTGGAATCCAGAACTAAAATGTGTTTCTGCTGAGCAGGAAGTTTATGACTATTGGGT
AAAGTCTCACCCAGCTGCGAAAGGATTGAACAACAAGCCTTTTCCCCACTATGATGAGTTGTCCTTCATATTTGGTAAGGAACGTGCTGGTGGATCAGGTGCTCAGTTGC
AAACTGAAATTGGATCAAGTCGAACAGAATTGTTGGAGGAGTTTTCTCTTGACGACTCTCAGGAGTATTATGTCCCCATCCCTCCTTACACTGCCGAAGATGCACCAGTA
AAGGGGATTAACAATACACTTGTTAGGACTCAGGTTGGTGGCTCTTCATCTAGTTTAGGCAAAAGGAAAAGAAGTCACCATAAATCAGCAATGGTGAATGTGATCGAAGA
TGCTATGCAAGTGCAACAATCATACCTGAAGGTTATTTCTGAGTGGTCGAGAGAACAACGTGCTATTGAAGCTACACTACATGAAAGATGTCTGGCCGAGCTAAAGAACC
TCCCTGACCTTGATGGACCATTATTCACATATGCCATGAAGCAAGTTTTGGCTAGTGAATTCACTATGGAGTTATTCCTCTCTGTTCCAAAGAAGTTCAAGATGGATTAC
TTAAAACATTTGTAGTACTTGCCTTTCTTCAGTTCTATTTTCCTCGTCTTTTTAATTTTTCTGTTGTTGTGTTTTTTGGATTTAATATTTTAGACTTTTTTTTGTGGCAC
CTAGATGGTGTCATTGGTGGTTGAACATCTATTTTACTTTTGAAGGTACCTTGTAGGTGACCTTGAATTATTATCATATCTATGATTCATTTTGTATGTAACCTTTAATT
ATTATCATATCTACG
Protein sequenceShow/hide protein sequence
MLGPTCSGFGWNPELKCVSAEQEVYDYWVKSHPAAKGLNNKPFPHYDELSFIFGKERAGGSGAQLQTEIGSSRTELLEEFSLDDSQEYYVPIPPYTAEDAPVKGINNTLV
RTQVGGSSSSLGKRKRSHHKSAMVNVIEDAMQVQQSYLKVISEWSREQRAIEATLHERCLAELKNLPDLDGPLFTYAMKQVLASEFTMELFLSVPKKFKMDYLKHL