CuGenDBv2

Gene ID	Sed0005295
Organism	Sechium edule (Chayote v1)
Description	RNA-dependent RNA polymerase
Genome location	Contig00107:64573..66051
RNA-Seq Expression	Sed0005295
Synteny	Sed0005295
Gene Ontology terms	GO:0006811 - ion transport (biological process) GO:0034654 - nucleobase-containing compound biosynthetic process (biological process) GO:0046034 - ATP metabolic process (biological process) GO:0016020 - membrane (cellular component) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR008686 - RNA-dependent RNA polymerase, mitoviral

Homology

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GenBank top hits

e value

%identity

Alignment

OIV93954.1 hypothetical protein TanjilG_05657 [Lupinus angustifolius]

1.2e-44

45.81

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Query:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL
        VAA Y++ L +L +++S SKSL SP GA EFAK+FR+ ++T DVSP+S+RK+     SP+GWY +  T  R LRLST LR+A  GF+AASR L+S KHG 
Subjt:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL

Query:  RARRHLVMLMYARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINPRPD--E
        RA+R L+M +Y +    +L L   VG  +  ++ GR+I+F+ + Y PKDLV PP       D H  ++E TLYQGW++ YLKYL WY+ + ++P      
Subjt:  RARRHLVMLMYARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINPRPD--E

Query:  ILSAPVYIRTWY------STFRFGMTF
         + AP+YIRTW+       T+++G+ F
Subjt:  ILSAPVYIRTWY------STFRFGMTF

QHN95476.1 putative mitochondrial protein [Arachis hypogaea]

1.1e-50

49.12

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Query:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL
        VA+ Y  +++RL +K+S +KS+ SP GA EFAK+FR+D+LT D+SPVS+RK  +  KSP+GWYNYV + P+S+RLSTLLRI  FGFKAASRP+    HG 
Subjt:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL

Query:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD
        R RR LVML+  Y +C + E +L++ +G  IPPQ  G ++  +++++ PK+L  PP E    P       E ++ QGWMRQYL YL WYSLL   P    
Subjt:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD

Query:  EILSAPVYIRTWYS------TFRFGMTF
        +   APVY  TW+S       FRFG+ F
Subjt:  EILSAPVYIRTWYS------TFRFGMTF

RYQ84098.1 hypothetical protein Ahy_B10g103003 [Arachis hypogaea]

2.0e-50

49.12

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Query:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL
        VA+ Y  ++ RL +K+S +KS+ SP GA EFAK+FR+D+LT D+SPVS+RK  +  KSP+GWYNYV + P+S+RLSTLLRI  FGFKAASRP+    HG 
Subjt:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL

Query:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD
        R RR LVML+  Y +C + E +L++ +G  IPPQ  G ++  +++++ PK+L  PP E    P       E ++ QGWMRQYL YL WYSLL   P    
Subjt:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD

Query:  EILSAPVYIRTWYS------TFRFGMTF
        +   APVY  TW+S       FRFG+ F
Subjt:  EILSAPVYIRTWYS------TFRFGMTF

RYQ91004.1 hypothetical protein Ahy_B09g096891 [Arachis hypogaea]

1.1e-50

49.12

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Query:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL
        VA+ Y  +++RL +K+S +KS+ SP GA EFAK+FR+D+LT D+SPVS+RK  +  KSP+GWYNYV + P+S+RLSTLLRI  FGFKAASRP+    HG 
Subjt:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL

Query:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD
        R RR LVML+  Y +C + E +L++ +G  IPPQ  G ++  +++++ PK+L  PP E    P       E ++ QGWMRQYL YL WYSLL   P    
Subjt:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD

Query:  EILSAPVYIRTWYS------TFRFGMTF
        +   APVY  TW+S       FRFG+ F
Subjt:  EILSAPVYIRTWYS------TFRFGMTF

XP_019433150.1 PREDICTED: uncharacterized protein LOC109340041 [Lupinus angustifolius]

1.2e-44

45.81

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Query:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL
        VAA Y++ L +L +++S SKSL SP GA EFAK+FR+ ++T DVSP+S+RK+     SP+GWY +  T  R LRLST LR+A  GF+AASR L+S KHG 
Subjt:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL

Query:  RARRHLVMLMYARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINPRPD--E
        RA+R L+M +Y +    +L L   VG  +  ++ GR+I+F+ + Y PKDLV PP       D H  ++E TLYQGW++ YLKYL WY+ + ++P      
Subjt:  RARRHLVMLMYARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINPRPD--E

Query:  ILSAPVYIRTWY------STFRFGMTF
         + AP+YIRTW+       T+++G+ F
Subjt:  ILSAPVYIRTWY------STFRFGMTF

TrEMBL top hits

e value

%identity

Alignment

A0A1R3L0Z0 RNA-dependent RNA polymerase, mitoviral

1.6e-34

44.74

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Query:  GMTFVPTWKSMPSNSVAMSIIKDKKLRKRSSFLSFPYEFSVFFILAEYLRQEWSSITQFGIWQHYVRYPFDDDTNDWLTTMSQSTSQKVLSDPMPHIDDY
        G+ F+PTWK++P+     S    + LR  S     P            L ++    +Q  +W  YVRYPF D TN+ +T       ++ +    P++   
Subjt:  GMTFVPTWKSMPSNSVAMSIIKDKKLRKRSSFLSFPYEFSVFFILAEYLRQEWSSITQFGIWQHYVRYPFDDDTNDWLTTMSQSTSQKVLSDPMPHIDDY

Query:  IYLVMKSPAGRLCCACTGEGKRRVFAIGNYINQRLLYPFHQWLASVLRLIPMDGTFDQTAPLDRLAGSPGTAYSIDLKAATDRWPFTLMA
          L +++  GRLCCACT +GKRR+FA+GNY+NQRLL+P HQW ASVL+ IPMDGTF+QT PLDRLAG PGT +SIDLK+ TDR   + +A
Subjt:  IYLVMKSPAGRLCCACTGEGKRRVFAIGNYINQRLLYPFHQWLASVLRLIPMDGTFDQTAPLDRLAGSPGTAYSIDLKAATDRWPFTLMA

A0A2L2P752 RNA-dependent RNA polymerase

8.1e-34

39.01

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Query:  GMTFVPTWKSMPSNSVAMSIIKDK--------KLRKRSSFLSFPYEFSVFFILAEYLRQEWSSITQFGIWQHYVRYPFDDDTNDWLTTMSQSTSQKVLSD
        GM F PTWK++P++ +  S++ ++         L+ +S FLS PYE + +  L E++  +    +Q  +W+  VRYPFD        T + S        
Subjt:  GMTFVPTWKSMPSNSVAMSIIKDK--------KLRKRSSFLSFPYEFSVFFILAEYLRQEWSSITQFGIWQHYVRYPFDDDTNDWLTTMSQSTSQKVLSD

Query:  PMPHIDDYIYLVMKSPAGRLCCACTGEGKRRVFAIGNYINQRLLYPFHQWLASVLRLIPMDGTFDQTAPLDRLAGSPGTAYSIDLKAATDRWPFTLMACM
          P +     L +    GRL C+  G GKRR+FAIGNY+NQRLL P H W+ SVLR +P DGT+DQT PL  L G     +S DL +ATDRWP  +M  M
Subjt:  PMPHIDDYIYLVMKSPAGRLCCACTGEGKRRVFAIGNYINQRLLYPFHQWLASVLRLIPMDGTFDQTAPLDRLAGSPGTAYSIDLKAATDRWPFTLMACM

Query:  TASLFGEEFATAATEYTLRHNTF
            F   FA+A     L  N F
Subjt:  TASLFGEEFATAATEYTLRHNTF

A0A444X340 Uncharacterized protein

9.5e-51

49.12

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Query:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL
        VA+ Y  ++ RL +K+S +KS+ SP GA EFAK+FR+D+LT D+SPVS+RK  +  KSP+GWYNYV + P+S+RLSTLLRI  FGFKAASRP+    HG 
Subjt:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL

Query:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD
        R RR LVML+  Y +C + E +L++ +G  IPPQ  G ++  +++++ PK+L  PP E    P       E ++ QGWMRQYL YL WYSLL   P    
Subjt:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD

Query:  EILSAPVYIRTWYS------TFRFGMTF
        +   APVY  TW+S       FRFG+ F
Subjt:  EILSAPVYIRTWYS------TFRFGMTF

A0A444XMX5 Uncharacterized protein

5.5e-51

49.12

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Query:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL
        VA+ Y  +++RL +K+S +KS+ SP GA EFAK+FR+D+LT D+SPVS+RK  +  KSP+GWYNYV + P+S+RLSTLLRI  FGFKAASRP+    HG 
Subjt:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL

Query:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD
        R RR LVML+  Y +C + E +L++ +G  IPPQ  G ++  +++++ PK+L  PP E    P       E ++ QGWMRQYL YL WYSLL   P    
Subjt:  RARRHLVMLM--YARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINP-RPD

Query:  EILSAPVYIRTWYS------TFRFGMTF
        +   APVY  TW+S       FRFG+ F
Subjt:  EILSAPVYIRTWYS------TFRFGMTF

A0A4P1QSR8 ATP synthase subunit alpha, mitochondrial

5.9e-45

45.81

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Query:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL
        VAA Y++ L +L +++S SKSL SP GA EFAK+FR+ ++T DVSP+S+RK+     SP+GWY +  T  R LRLST LR+A  GF+AASR L+S KHG 
Subjt:  VAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGL

Query:  RARRHLVMLMYARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINPRPD--E
        RA+R L+M +Y +    +L L   VG  +  ++ GR+I+F+ + Y PKDLV PP       D H  ++E TLYQGW++ YLKYL WY+ + ++P      
Subjt:  RARRHLVMLMYARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINPRPD--E

Query:  ILSAPVYIRTWY------STFRFGMTF
         + AP+YIRTW+       T+++G+ F
Subjt:  ILSAPVYIRTWY------STFRFGMTF

SwissProt top hits

e value

%identity

Alignment

P92543 Uncharacterized mitochondrial protein AtMg01110

4.7e-07

46.48

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Query:  SVLRLIPMDGTFDQTAPLDRLA-GSPGTAYSIDLKAATDRWPFTLMACMTASLFGEEFATAATEYTLRHNT
        SVLR IP DGTF Q  P+ RLA   P    S DL AATDRWP  ++  + A LFG+  A+      L  N+
Subjt:  SVLRLIPMDGTFDQTAPLDRLA-GSPGTAYSIDLKAATDRWPFTLMACMTASLFGEEFATAATEYTLRHNT

P92567 Uncharacterized mitochondrial protein AtMg01410

9.5e-08

44.12

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Query:  RLIPMDGTFDQTAPLDRLAGSPGTAYSIDLKAATDRWPFTLMACMTASLFGEEFATAATEYTLRHNTF
        R +P DGTF+QT P DRL GS   ++S DLK+ATDRWP   +  +   LF   FA++        N F
Subjt:  RLIPMDGTFDQTAPLDRLAGSPGTAYSIDLKAATDRWPFTLMACMTASLFGEEFATAATEYTLRHNTF

Arabidopsis top hits

e value

%identity

Alignment

AT2G07749.1 Mitovirus RNA-dependent RNA polymerase

1.0e-04

41.07

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Query:  TVAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFET
        +VA  Y  +L  L + IS +KS+ S TG  EFAK+F +  ++ D+SPVS + + E+
Subjt:  TVAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFET

ATMG01110.1 Mitovirus RNA-dependent RNA polymerase

3.4e-08

46.48

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Query:  SVLRLIPMDGTFDQTAPLDRLA-GSPGTAYSIDLKAATDRWPFTLMACMTASLFGEEFATAATEYTLRHNT
        SVLR IP DGTF Q  P+ RLA   P    S DL AATDRWP  ++  + A LFG+  A+      L  N+
Subjt:  SVLRLIPMDGTFDQTAPLDRLA-GSPGTAYSIDLKAATDRWPFTLMACMTASLFGEEFATAATEYTLRHNT

ATMG01410.1 open reading frame 204

6.8e-09

44.12

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Query:  RLIPMDGTFDQTAPLDRLAGSPGTAYSIDLKAATDRWPFTLMACMTASLFGEEFATAATEYTLRHNTF
        R +P DGTF+QT P DRL GS   ++S DLK+ATDRWP   +  +   LF   FA++        N F
Subjt:  RLIPMDGTFDQTAPLDRLAGSPGTAYSIDLKAATDRWPFTLMACMTASLFGEEFATAATEYTLRHNTF

Sequences

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CDS sequence

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ATGCTTTTCAAATTGACAGTCGCAGCGGCATACTCTCGTATTCTTAAGCGACTCTGCATTAAGATTTCTGTAAGTAAGTCTTTGACTTCACCTACAGGGGCGGCTGAGTT
TGCAAAGAAATTTCGACTGGACCATTTAACAACAGATGTGTCTCCGGTCTCAGTTCGCAAAATCTTTGAAACCCGTAAGTCTCCACTTGGATGGTATAACTATGTTAGTA
CTACTCCGAGAAGCTTGCGGTTATCAACTCTGCTTAGGATTGCTGTTTTTGGTTTCAAAGCTGCATCCCGTCCTCTTGTGTCTTCGAAGCACGGTTTACGTGCTAGACGG
CACTTGGTTATGTTAATGTATGCTCGATGTCAGAATACTGAGCTTGCTCTCACCTTAGCTGTCGGTGCTTGGATACCTCCTCAGGTGTTTGGGAGGATAATTTCTTTTAT
GGTTGATTATTATCGACCAAAAGATCTTGTCCCTCCACCACAAGAGGCACTATTCGATCCTGATAATCATGGTTACATCTTAGAAGTAACCCTTTATCAAGGTTGGATGC
GTCAGTATCTTAAGTACTTACACTGGTATTCTCTCTTACTTATAAATCCACGGCCAGACGAGATACTTTCTGCGCCTGTCTATATACGGACATGGTACTCAACTTTCCGG
TTTGGCATGACGTTTGTCCCAACATGGAAGTCCATGCCGTCTAATAGTGTAGCCATGTCTATTATTAAGGATAAGAAGCTTAGAAAGAGATCTTCTTTCCTTAGCTTTCC
CTATGAGTTTTCGGTTTTCTTCATTCTTGCCGAATATCTTCGTCAAGAGTGGAGTTCGATTACTCAGTTTGGGATATGGCAGCACTATGTGCGGTATCCTTTTGATGATG
ATACTAATGACTGGCTAACCACCATGTCACAGTCTACATCTCAAAAGGTGCTGTCCGATCCCATGCCCCATATAGATGATTACATCTATTTGGTCATGAAATCGCCAGCT
GGACGACTATGTTGCGCTTGCACTGGAGAGGGGAAGAGACGTGTGTTTGCTATAGGTAACTATATCAACCAGCGTCTCTTATACCCGTTTCATCAGTGGCTTGCGTCTGT
TCTCAGGCTCATCCCTATGGATGGCACCTTTGATCAGACCGCGCCTCTTGATCGTTTAGCAGGTAGTCCTGGTACAGCCTATTCTATAGATCTAAAAGCTGCCACCGACC
GGTGGCCTTTTACATTAATGGCGTGCATGACTGCTTCGCTATTCGGTGAAGAGTTTGCTACTGCTGCTACTGAGTATACCTTGCGGCATAATACATTTTGA

mRNA sequence

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Protein sequence

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MLFKLTVAAAYSRILKRLCIKISVSKSLTSPTGAAEFAKKFRLDHLTTDVSPVSVRKIFETRKSPLGWYNYVSTTPRSLRLSTLLRIAVFGFKAASRPLVSSKHGLRARR
HLVMLMYARCQNTELALTLAVGAWIPPQVFGRIISFMVDYYRPKDLVPPPQEALFDPDNHGYILEVTLYQGWMRQYLKYLHWYSLLLINPRPDEILSAPVYIRTWYSTFR
FGMTFVPTWKSMPSNSVAMSIIKDKKLRKRSSFLSFPYEFSVFFILAEYLRQEWSSITQFGIWQHYVRYPFDDDTNDWLTTMSQSTSQKVLSDPMPHIDDYIYLVMKSPA
GRLCCACTGEGKRRVFAIGNYINQRLLYPFHQWLASVLRLIPMDGTFDQTAPLDRLAGSPGTAYSIDLKAATDRWPFTLMACMTASLFGEEFATAATEYTLRHNTF

Sed0005295 (gene) of Chayote v1 genome