; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0005297 (gene) of Chayote v1 genome

Gene IDSed0005297
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S27
Genome locationLG09:3112075..3114359
RNA-Seq ExpressionSed0005297
SyntenySed0005297
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACH63219.1 ribosomal protein S27-like protein [Rheum australe]2.1e-4197.67Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

GAY68717.1 hypothetical protein CUMW_266320 [Citrus unshiu]2.8e-4197.67Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

XP_006446889.1 40S ribosomal protein S27-2 [Citrus clementina]2.8e-4197.67Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

XP_007049127.1 PREDICTED: 40S ribosomal protein S27-2 [Theobroma cacao]4.7e-4196.51Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFR+KGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

XP_022960233.1 40S ribosomal protein S27-2-like [Cucurbita moschata]6.2e-4196.51Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A2H5QKC8 40S ribosomal protein S271.3e-4197.67Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

A0A2H5QVV3 40S ribosomal protein S271.3e-4197.67Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

A0A6J0ZHY0 40S ribosomal protein S272.3e-4196.51Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFR+KGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

B5M1X0 40S ribosomal protein S271.0e-4197.67Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

V4W2J8 40S ribosomal protein S271.3e-4197.67Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-11.2e-3988.1Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

P47903 40S ribosomal protein S272.1e-3683.72Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVL +DIDLLNPP ELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CG+C SVLC PTG   RLTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-37.1e-4090.48Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

Q96564 40S ribosomal protein S272.4e-4090.7Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVC  CQ+VLCQPTGG+ARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-21.2e-4291.86Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein8.6e-4188.1Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

AT3G61110.1 ribosomal protein S278.3e-4491.86Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein1.4e-3577.91Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPP ELEK+KHKLKRLV SPNS+FM V+C  C NITT+FSHSQ+VVVCG CQ+VLCQPTGG+A+LT GCSFR+  D
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein5.0e-4190.48Show/hide
Query:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTCAAAACGACATCGATTTGCTCAATCCGCCGGTGGAATTGGAGAAGAAGAAGCATAAGCTCAAGCGTCTTGTGCAGTCCCCCAACTCGTTCTTCATGGATGT
GAAGTGCCAGGGTTGCTTTAACATAACTACTGTATTCAGTCATTCACAATCAGTCGTGGTATGCGGGAATTGCCAATCGGTCTTGTGCCAGCCAACCGGAGGGCGTGCTA
GGCTAACAGAAGGGTGTTCCTTTAGAAGGAAGGGCGACTAA
mRNA sequenceShow/hide mRNA sequence
CTATTATACCCTCAAAACTCCATCACACTTCGTAGCCCTAACTACTTCCAAAACCAAAGGCCAAGATTCACTCCCAACAAAATCCAACGGTTCAGAATCCCCAGCCGCTC
CTTTATATACATCCTAAACGGCCCCCATCGCCGCCTTCACAACATTCATCGCACCGCCCTGTTTCTCTCGTCGGAATCTTAGGGTTTCCGATCCCAAGCAATTCCGTTCA
AATCAAAATGGTTCTTCAAAACGACATCGATTTGCTCAATCCGCCGGTGGAATTGGAGAAGAAGAAGCATAAGCTCAAGCGTCTTGTGCAGTCCCCCAACTCGTTCTTCA
TGGATGTGAAGTGCCAGGGTTGCTTTAACATAACTACTGTATTCAGTCATTCACAATCAGTCGTGGTATGCGGGAATTGCCAATCGGTCTTGTGCCAGCCAACCGGAGGG
CGTGCTAGGCTAACAGAAGGGTGTTCCTTTAGAAGGAAGGGCGACTAATTTATTGGCCTCAGAATTGGCTTGATGTAGGATCAGAATGTGGGCTGGTATGAATTTTGATA
TTATTGCAATTGAGCACATTTTGTTTTTGTCTCGGGTTTTTCGACGTTTTTGTTGTTGATTATTCAGTTTTGCTTAAGAAGAATGAGCATTTTGGCATGGCTGTTGCAGT
ACGTTAATTTTGATGTTGTCAATGAATGAAACTAAGTTATGTTTGAAGTAATTCATATCGTGTTCTGCCTGTTCTTCAATACTTTATACATTGATCGATCGATTTGATTG
TTTCACGAGTTATTCATTTAGACTACATTTTTGCTGCTAATCTTTGAAATTGGGAATTTTTCTTTCTTGAA
Protein sequenceShow/hide protein sequence
MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD