; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0005315 (gene) of Chayote v1 genome

Gene IDSed0005315
OrganismSechium edule (Chayote v1)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationLG11:31265774..31266457
RNA-Seq ExpressionSed0005315
SyntenySed0005315
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582092.1 hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3847.14Show/hide
Query:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI
        +AID++RFLGDVG+TDL  L+RILPHCT++QLM IE  SKGRDLTPVTNKLWK FYE+KFGKDA + V E    + KE+  W+Q+YEQK+K++E K   I
Subjt:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI

Query:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF
          R IQN + EKARK+SRQVK  ++  S           S +  K KV TK         C V   S     K  +     ++++K++ +  +SI+ KN 
Subjt:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF

Query:  IVFQRSRAQK
        I F+R+  QK
Subjt:  IVFQRSRAQK

KAG6582215.1 40S ribosomal protein S21-1, partial [Cucurbita argyrosperma subsp. sororia]3.8e-3745.93Show/hide
Query:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI
        +AID++R LGDVG TDL  L+ ILPHCT+DQLMHIE  SKGRDLTPVTNKLWK FYE+KFG DA + V E+   + KE+  W+Q+YE K+K +E K   I
Subjt:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI

Query:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF
          R IQN + EKARK+SRQVK  ++L S           S +  K +V TK         C V   S     K  +  +  ++++K++ +  +SI+ KN 
Subjt:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF

Query:  IVFQRSRAQ
        I F+R+  Q
Subjt:  IVFQRSRAQ

XP_022979565.1 uncharacterized protein LOC111479243 [Cucurbita maxima]5.2e-3948.1Show/hide
Query:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI
        +AID++RFLGDVG TDL  L+ ILPHCT++QLM IE SSKGRDLTPVTNKLWK FYE+KFGKDA + V E    + KE+  W+Q+YE K+K++E K   I
Subjt:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI

Query:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF
          R IQN Q EKARK+SRQVK  ++  S           S +  KSKV TK        FC V   S     K  +     ++++K++ +  +SI+ KN 
Subjt:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF

Query:  IVFQRSRAQK
        I F+R+  QK
Subjt:  IVFQRSRAQK

XP_022979571.1 uncharacterized protein LOC111479252 [Cucurbita maxima]3.8e-3745.24Show/hide
Query:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI
        +AID++RFLGDVG TDL  L+ ILPHCT+DQLMHIE  SKGRDLTP+TNKLWK FYE+KFGKD  + V ++   + KE+  W+Q+YE K+K++E K   +
Subjt:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI

Query:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF
          R I+N Q EKARK+SRQVK  ++  S           S +  K KV TK         C V   S     K  +     ++++K++ +  +SI+ KN 
Subjt:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF

Query:  IVFQRSRAQK
        I F+R+  QK
Subjt:  IVFQRSRAQK

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]3.3e-4148.03Show/hide
Query:  QVSKMLSSL----DDKEAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQ
        +VSK+ SS        EAID++RFLGDVGDTDL +L+RILPHCT+DQLMHIE SSKGRDLTPVT+KLWKNFYEKKFGK+ +  V +K  + +KE+  W+Q
Subjt:  QVSKMLSSL----DDKEAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQ

Query:  LYEQKVKKIEAKGSAIGNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFE---RNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKG
        LYE K++ +E K   I  R  QN QKE ARK+SR++ F + +SS   +KR  E   ++   TT+SK+  K   RE  Q C V      K         + 
Subjt:  LYEQKVKKIEAKGSAIGNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFE---RNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKG

Query:  RLMEKSKDDIHKSIQMKNFIVFQRSRAQK
        ++++K+K +  + I+ KN I F+R+  QK
Subjt:  RLMEKSKDDIHKSIQMKNFIVFQRSRAQK

TrEMBL top hitse value%identityAlignment
A0A0A0KJR8 Nudix hydrolase domain-containing protein9.3e-3446.91Show/hide
Query:  MSQVSKMLSSL--DDKEAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQ
        MS+VSK +  L  D  +AID+V+FLGDVGDTDL+ L+ IL HCT DQL+HIE  SKGRDLTP+TNKLWKNFYE+KFGKD    V       + E   W  
Subjt:  MSQVSKMLSSL--DDKEAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQ

Query:  LYEQKVKKIEAKGSAIGNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYP
        LY  K+K++E +   I +R+IQ+YQKEKARK+SRQ+ F     S    K N + N T+  KS        ++  +   VP  S    ++++  P
Subjt:  LYEQKVKKIEAKGSAIGNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYP

A0A6J1G8W9 transcription elongation factor B polypeptide 3 isoform X13.5e-3343.81Show/hide
Query:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI
        +AID +RFLGDVG+TDL +L+RILPHCT+DQLMH+E+SS+GRDLTPVT+KLWK FYE++FG++ T+ V E+  Q++K A  W QLYE K+K IE   S  
Subjt:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI

Query:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF
         +R+ Q+Y KE ARK+SRQ++                        SKVP  ++ R    F      S +          K +L++KSK ++ +S +MKN 
Subjt:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF

Query:  IVFQRSRAQK
          ++R+  QK
Subjt:  IVFQRSRAQK

A0A6J1I1I3 transcription elongation factor B polypeptide 3 isoform X11.6e-3343.81Show/hide
Query:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI
        +AID +RFLGDVG+TDL +L+RILPHCT+DQLMH+E+SS+GRDLTPVT+KLWK FYE++FG+++T+ V E+  Q++K A  W QLYE K+K IE   S  
Subjt:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI

Query:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF
         +R+ Q+Y KE ARK+SRQ++                        SKVP  ++ R    F      S +          K +L++KSK ++ +S +MKN 
Subjt:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF

Query:  IVFQRSRAQK
          ++R+  QK
Subjt:  IVFQRSRAQK

A0A6J1IR58 uncharacterized protein LOC1114792521.8e-3745.24Show/hide
Query:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI
        +AID++RFLGDVG TDL  L+ ILPHCT+DQLMHIE  SKGRDLTP+TNKLWK FYE+KFGKD  + V ++   + KE+  W+Q+YE K+K++E K   +
Subjt:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI

Query:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF
          R I+N Q EKARK+SRQVK  ++  S           S +  K KV TK         C V   S     K  +     ++++K++ +  +SI+ KN 
Subjt:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF

Query:  IVFQRSRAQK
        I F+R+  QK
Subjt:  IVFQRSRAQK

A0A6J1ITM2 uncharacterized protein LOC1114792432.5e-3948.1Show/hide
Query:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI
        +AID++RFLGDVG TDL  L+ ILPHCT++QLM IE SSKGRDLTPVTNKLWK FYE+KFGKDA + V E    + KE+  W+Q+YE K+K++E K   I
Subjt:  EAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSAI

Query:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF
          R IQN Q EKARK+SRQVK  ++  S           S +  KSKV TK        FC V   S     K  +     ++++K++ +  +SI+ KN 
Subjt:  GNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNF

Query:  IVFQRSRAQK
        I F+R+  QK
Subjt:  IVFQRSRAQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).2.7e-2533.18Show/hide
Query:  KEAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSA
        ++AID V+++G VG  D Q+L++IL HCTL+QL HIE ++   DL+P+T+K WK FY+K +G++    + E     +     WR LYE KV  ++ K   
Subjt:  KEAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSA

Query:  IGNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKN
        +G R+ + Y+ E  RK+SRQ K   V S     KR F  NS                                 ++   +K  +M+K+K D+ KS ++KN
Subjt:  IGNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKN

Query:  FIVFQRSRAQK
            +R+  QK
Subjt:  FIVFQRSRAQK

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).2.7e-2533.18Show/hide
Query:  KEAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSA
        ++AID V+++G VG  D Q+L++IL HCTL+QL HIE ++   DL+P+T+K WK FY+K +G++    + E     +     WR LYE KV  ++ K   
Subjt:  KEAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAKGSA

Query:  IGNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKN
        +G R+ + Y+ E  RK+SRQ K   V S     KR F  NS                                 ++   +K  +M+K+K D+ KS ++KN
Subjt:  IGNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKN

Query:  FIVFQRSRAQK
            +R+  QK
Subjt:  FIVFQRSRAQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAAGTAAGTAAAATGCTATCTTCATTAGATGATAAGGAAGCTATAGATGCTGTTAGATTTCTCGGCGACGTGGGCGACACCGATCTACAAATCCTAGACCGAAT
TCTGCCACATTGCACGCTTGACCAATTGATGCATATCGAAAGAAGTTCGAAAGGAAGAGATCTCACTCCAGTTACCAACAAATTGTGGAAAAACTTCTACGAAAAGAAGT
TCGGCAAAGATGCTACTAGTTACGTGTTTGAAAAGACGACACAACGCGAGAAAGAGGCAGTTACATGGAGGCAGTTATACGAGCAGAAAGTAAAGAAGATAGAAGCAAAG
GGGAGTGCAATTGGAAATAGAATGATACAAAACTACCAAAAGGAAAAGGCTCGCAAAGAAAGTCGTCAAGTAAAGTTCTATGATGTTTTATCGTCGGGCACGGGCCGTAA
GCGCAACTTTGAACGTAATAGTACTATTACTACTAAGAGCAAGGTACCAACGAAGACGGATACGAGAGAAGTAGTACAATTTTGTGATGTTCCTCCCAATTCAATGATTA
AAAAACGAAAGTTTGATTTCTATCCAATTAAGGGCAGGTTGATGGAGAAATCAAAAGATGATATACATAAAAGTATACAGATGAAAAATTTTATAGTTTTTCAAAGAAGT
AGAGCGCAAAAGCAAAAGCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCAAGTAAGTAAAATGCTATCTTCATTAGATGATAAGGAAGCTATAGATGCTGTTAGATTTCTCGGCGACGTGGGCGACACCGATCTACAAATCCTAGACCGAAT
TCTGCCACATTGCACGCTTGACCAATTGATGCATATCGAAAGAAGTTCGAAAGGAAGAGATCTCACTCCAGTTACCAACAAATTGTGGAAAAACTTCTACGAAAAGAAGT
TCGGCAAAGATGCTACTAGTTACGTGTTTGAAAAGACGACACAACGCGAGAAAGAGGCAGTTACATGGAGGCAGTTATACGAGCAGAAAGTAAAGAAGATAGAAGCAAAG
GGGAGTGCAATTGGAAATAGAATGATACAAAACTACCAAAAGGAAAAGGCTCGCAAAGAAAGTCGTCAAGTAAAGTTCTATGATGTTTTATCGTCGGGCACGGGCCGTAA
GCGCAACTTTGAACGTAATAGTACTATTACTACTAAGAGCAAGGTACCAACGAAGACGGATACGAGAGAAGTAGTACAATTTTGTGATGTTCCTCCCAATTCAATGATTA
AAAAACGAAAGTTTGATTTCTATCCAATTAAGGGCAGGTTGATGGAGAAATCAAAAGATGATATACATAAAAGTATACAGATGAAAAATTTTATAGTTTTTCAAAGAAGT
AGAGCGCAAAAGCAAAAGCGTTAG
Protein sequenceShow/hide protein sequence
MSQVSKMLSSLDDKEAIDAVRFLGDVGDTDLQILDRILPHCTLDQLMHIERSSKGRDLTPVTNKLWKNFYEKKFGKDATSYVFEKTTQREKEAVTWRQLYEQKVKKIEAK
GSAIGNRMIQNYQKEKARKESRQVKFYDVLSSGTGRKRNFERNSTITTKSKVPTKTDTREVVQFCDVPPNSMIKKRKFDFYPIKGRLMEKSKDDIHKSIQMKNFIVFQRS
RAQKQKR