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Sed0005319 (gene) of Chayote v1 genome

Gene IDSed0005319
OrganismSechium edule (Chayote v1)
DescriptionF-box domain containing protein
Genome locationLG13:7406400..7407302
RNA-Seq ExpressionSed0005319
SyntenySed0005319
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577272.1 Regulation of nuclear pre-mRNA domain-containing protein 1B, partial [Cucurbita argyrosperma subsp. sororia]7.1e-0971.19Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K QCRWNAENLK+PEP NAAH S+SN SKDI  S TPK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

KAG7015357.1 Apoptotic chromatin condensation inducer in the nucleus, partial [Cucurbita argyrosperma subsp. argyrosperma]7.1e-0971.19Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K QCRWNAENLK+PEP NAAH S+SN SKDI  S TPK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

XP_022929237.1 histone acetyltransferase KAT6A-like isoform X1 [Cucurbita moschata]7.1e-0971.19Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K QCRWNAENLK+PEP NAAH S+SN SKDI  S TPK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

XP_022929238.1 histone acetyltransferase KAT6A-like isoform X2 [Cucurbita moschata]7.1e-0971.19Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K QCRWNAENLK+PEP NAAH S+SN SKDI  S TPK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

XP_023552084.1 histone acetyltransferase KAT6A-like isoform X1 [Cucurbita pepo subsp. pepo]7.1e-0971.19Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K QCRWNAENLK+PEP NAAH S+SN SKDI  S TPK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

TrEMBL top hitse value%identityAlignment
A0A0A0KUK7 SAP domain-containing protein1.5e-0767.8Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K Q RWN+ENLK+PEP NAAH S+SN SKDI  ST PK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

A0A6J1EM87 histone acetyltransferase KAT6A-like isoform X13.5e-0971.19Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K QCRWNAENLK+PEP NAAH S+SN SKDI  S TPK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

A0A6J1ERI2 histone acetyltransferase KAT6A-like isoform X23.5e-0971.19Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K QCRWNAENLK+PEP NAAH S+SN SKDI  S TPK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

A0A6J1J3E0 histone acetyltransferase KAT6A-like isoform X21.0e-0869.49Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K QCRWNAENLK+PEP N AH S+SN SKDI  S TPK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

A0A6J1J6J9 histone acetyltransferase KAT6A-like isoform X11.0e-0869.49Show/hide
Query:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE
        GNES K QCRWNAENLK+PEP N AH S+SN SKDI  S TPK N   SDST SED S+
Subjt:  GNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNL--SDSTPSEDLSE

SwissProt top hitse value%identityAlignment
Q3E6P4 F-box protein At2g022405.0e-0536.49Show/hide
Query:  DFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLEN--VPNLPIFPSKRELYFHICDNPIRLRAG
        D I  I+ F  +PR+ C  A VSK F+     D  W++F+       V    +F SK+ELYF +C NP+ +  G
Subjt:  DFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLEN--VPNLPIFPSKRELYFHICDNPIRLRAG

Q9ZVQ6 F-box protein PP2-B103.8e-0535.29Show/hide
Query:  SDSTPSEDLSEMDMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFV-FGLEN-VPNLPIFPSKRELYFHICDNPI
        S+S+P +   E     D I  I+ F   PR+ C  A VSK F+     D  W +F+    E+ +P   +F SK+ELYF +C++P+
Subjt:  SDSTPSEDLSEMDMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFV-FGLEN-VPNLPIFPSKRELYFHICDNPI

Q9ZVR0 Putative F-box protein PP2-B61.7e-0533.33Show/hide
Query:  TPSEDLSEMDMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLEN--VPNLPIFPSKRELYFHICDNPIRLRAG
        +P +DL E     D I  I+ F  +PR++C  A VSK F      D  W +F+       +P   +F SK++LYF +C +P+ +  G
Subjt:  TPSEDLSEMDMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLEN--VPNLPIFPSKRELYFHICDNPIRLRAG

Q9ZVR1 F-box protein PP2-B55.0e-0539.44Show/hide
Query:  DMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLENVPNLP---IFPSKRELYFHICD
        D+  D + II  F +TPR+    A VSK F      D  W +F+   + V  LP   +F SK+ELYF +CD
Subjt:  DMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLENVPNLP---IFPSKRELYFHICD

Q9ZVR5 Putative F-box protein PP2-B25.3e-0740.54Show/hide
Query:  DFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFG--LENVPNLPIFPSKRELYFHICDNPIRLRAG
        D I  I+ F  +PR+ C  A VSK F+     D  W++F+       VP   +F SK+ELYF ICDNP+ +  G
Subjt:  DFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFG--LENVPNLPIFPSKRELYFHICDNPIRLRAG

Arabidopsis top hitse value%identityAlignment
AT2G02240.1 F-box family protein3.5e-0636.49Show/hide
Query:  DFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLEN--VPNLPIFPSKRELYFHICDNPIRLRAG
        D I  I+ F  +PR+ C  A VSK F+     D  W++F+       V    +F SK+ELYF +C NP+ +  G
Subjt:  DFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLEN--VPNLPIFPSKRELYFHICDNPIRLRAG

AT2G02250.1 phloem protein 2-B23.8e-0840.54Show/hide
Query:  DFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFG--LENVPNLPIFPSKRELYFHICDNPIRLRAG
        D I  I+ F  +PR+ C  A VSK F+     D  W++F+       VP   +F SK+ELYF ICDNP+ +  G
Subjt:  DFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFG--LENVPNLPIFPSKRELYFHICDNPIRLRAG

AT2G02300.1 phloem protein 2-B53.5e-0639.44Show/hide
Query:  DMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLENVPNLP---IFPSKRELYFHICD
        D+  D + II  F +TPR+    A VSK F      D  W +F+   + V  LP   +F SK+ELYF +CD
Subjt:  DMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLENVPNLP---IFPSKRELYFHICD

AT2G02310.1 phloem protein 2-B61.2e-0633.33Show/hide
Query:  TPSEDLSEMDMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLEN--VPNLPIFPSKRELYFHICDNPIRLRAG
        +P +DL E     D I  I+ F  +PR++C  A VSK F      D  W +F+       +P   +F SK++LYF +C +P+ +  G
Subjt:  TPSEDLSEMDMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFVFGLEN--VPNLPIFPSKRELYFHICDNPIRLRAG

AT2G02360.1 phloem protein 2-B102.7e-0635.29Show/hide
Query:  SDSTPSEDLSEMDMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFV-FGLEN-VPNLPIFPSKRELYFHICDNPI
        S+S+P +   E     D I  I+ F   PR+ C  A VSK F+     D  W +F+    E+ +P   +F SK+ELYF +C++P+
Subjt:  SDSTPSEDLSEMDMSGDFIEIILGFIATPRELCRMAKVSKKFKEIACLDKFWNQFV-FGLEN-VPNLPIFPSKRELYFHICDNPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGTAGTGAGGGAACGGTGGCATTGTCATTTCTTGGCAAATCAAACAGGGGTCGGGGAAATGAGTCTGGGAAGGGGCAGTGTAGGTGGAATGCCGAAAACCTCAA
AGTTCCAGAGCCCCACAATGCTGCTCATGCATCCTCTAGTAATTCTTCAAAGGACATTCTTCTATCCACTACTCCAAAATGCAACTTATCTGACTCTACACCTAGTGAGG
ATCTTTCGGAGATGGATATGTCTGGAGATTTCATTGAAATTATTTTGGGTTTTATTGCTACCCCGAGAGAGCTTTGTCGGATGGCAAAAGTATCAAAAAAGTTCAAAGAG
ATAGCATGTTTAGATAAGTTTTGGAACCAATTTGTGTTTGGACTAGAAAATGTGCCGAACCTTCCAATATTCCCCTCTAAAAGGGAGCTCTACTTCCATATTTGCGACAA
TCCAATACGATTAAGAGCGGGAAACTCGGTAAATCTTTACTCTGCATCTTCAGAATCAATTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGTAGTGAGGGAACGGTGGCATTGTCATTTCTTGGCAAATCAAACAGGGGTCGGGGAAATGAGTCTGGGAAGGGGCAGTGTAGGTGGAATGCCGAAAACCTCAA
AGTTCCAGAGCCCCACAATGCTGCTCATGCATCCTCTAGTAATTCTTCAAAGGACATTCTTCTATCCACTACTCCAAAATGCAACTTATCTGACTCTACACCTAGTGAGG
ATCTTTCGGAGATGGATATGTCTGGAGATTTCATTGAAATTATTTTGGGTTTTATTGCTACCCCGAGAGAGCTTTGTCGGATGGCAAAAGTATCAAAAAAGTTCAAAGAG
ATAGCATGTTTAGATAAGTTTTGGAACCAATTTGTGTTTGGACTAGAAAATGTGCCGAACCTTCCAATATTCCCCTCTAAAAGGGAGCTCTACTTCCATATTTGCGACAA
TCCAATACGATTAAGAGCGGGAAACTCGGTAAATCTTTACTCTGCATCTTCAGAATCAATTTTTTGA
Protein sequenceShow/hide protein sequence
MSGSEGTVALSFLGKSNRGRGNESGKGQCRWNAENLKVPEPHNAAHASSSNSSKDILLSTTPKCNLSDSTPSEDLSEMDMSGDFIEIILGFIATPRELCRMAKVSKKFKE
IACLDKFWNQFVFGLENVPNLPIFPSKRELYFHICDNPIRLRAGNSVNLYSASSESIF