; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0005326 (gene) of Chayote v1 genome

Gene IDSed0005326
OrganismSechium edule (Chayote v1)
DescriptionDUF4228 domain-containing protein
Genome locationLG08:35972169..35973226
RNA-Seq ExpressionSed0005326
SyntenySed0005326
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583958.1 hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia]5.9e-7076.73Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP    SS+   DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK 
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA

Query:  RSRSSSRRKKRDHVNNNNHNNNATHH---------SAAVDS---------NAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPS
        RSRSSSRRKKR  V NNN+ NN  HH         SA  DS         N+ISM+NLLVSDQYLSEILSEKASTH  ERRRGRVGVWRPHL+SICESPS
Subjt:  RSRSSSRRKKRDHVNNNNHNNNATHH---------SAAVDS---------NAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPS

Query:  DI
        D+
Subjt:  DI

KAG7019577.1 hypothetical protein SDJN02_18538, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-6975.61Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP    SS+   DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK 
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA

Query:  RSRSSSRRKKRDHVNNNNHNNNATHH-------------SAAVDS--------NAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICE
        RSRSSSRRKKR  V NNN+ NN  HH             SA  DS        N+ISM+NLLVSDQYLSEILSEKASTH  ERRRGRVGVWRPHL+SICE
Subjt:  RSRSSSRRKKRDHVNNNNHNNNATHH-------------SAAVDS--------NAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICE

Query:  SPSDI
        SPSD+
Subjt:  SPSDI

KGN65978.2 hypothetical protein Csa_019723 [Cucumis sativus]8.9e-6676.88Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKK---PSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKAR
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKK   PSSS   D  + +PKIVIVPPEADLQRGKIYFLMPLPP+PDK R
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKK---PSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKAR

Query:  SRSSSRRKKRDHVNNNNHNNNATHHSAAV---DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI
             RRKKR++ NN++    A   ++AV    +N+ISMTNLLVSD YLSEILS+KASTH  ERRRGRVGVWRPHLQSICESPSDI
Subjt:  SRSSSRRKKRDHVNNNNHNNNATHHSAAV---DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI

XP_023001645.1 rhoGEF domain-containing protein gxcI-like [Cucurbita maxima]2.8e-6774.51Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD----DDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS        DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK 
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD----DDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA

Query:  RSRSSSRRKKRDHVNNNNHNNNATHHS------------AAVDSN--------AISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICES
        RSRSSSRRKKR  V NNN+ NN  HHS            A  D N        +ISM+NL VSDQYLSEILSEKASTH  ERRRGRVGVWRPHL+SICES
Subjt:  RSRSSSRRKKRDHVNNNNHNNNATHHS------------AAVDSN--------AISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICES

Query:  PSDI
        PS +
Subjt:  PSDI

XP_023519997.1 uncharacterized protein LOC111783307, partial [Cucurbita pepo subsp. pepo]2.1e-6775.38Show/hide
Query:  IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP-------SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKAR
        IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP       SS+   DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK R
Subjt:  IRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP-------SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKAR

Query:  SRSSSRRKKR--DHVNNNNHNNNATHHSAAV----------DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI
        SRSSSRRKKR  ++ N NNH+++ T  +AA           ++N+ISM+NLLVSDQYLSEILSEKASTH  ERRRGRVGVWRPHL+SICESPSD+
Subjt:  SRSSSRRKKR--DHVNNNNHNNNATHHSAAV----------DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI

TrEMBL top hitse value%identityAlignment
A0A0A0M094 Uncharacterized protein4.3e-6676.88Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKK---PSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKAR
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKK   PSSS   D  + +PKIVIVPPEADLQRGKIYFLMPLPP+PDK R
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKK---PSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKAR

Query:  SRSSSRRKKRDHVNNNNHNNNATHHSAAV---DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI
             RRKKR++ NN++    A   ++AV    +N+ISMTNLLVSD YLSEILS+KASTH  ERRRGRVGVWRPHLQSICESPSDI
Subjt:  SRSSSRRKKRDHVNNNNHNNNATHHSAAV---DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI

A0A1S3B8G2 uncharacterized protein LOC1034869131.3e-6575.66Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKP    SSS   D  +++PKIVIVPPEADLQRGKIYFLMPLPP+PDK 
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA

Query:  RSRSSSRRKKRDHVNNNNHNNNATHHSAAV-----DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI
        R     RRKKR+H NN++        ++AV     ++N ISMTNLLVSD YLSEILS+KASTH  ERRRGRVGVWRPHLQSICESPSDI
Subjt:  RSRSSSRRKKRDHVNNNNHNNNATHHSAAV-----DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI

A0A5A7UMG1 DUF4228 domain-containing protein1.3e-6575.66Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKASDVMKAHPKHVLKKP    SSS   D  +++PKIVIVPPEADLQRGKIYFLMPLPP+PDK 
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKP----SSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA

Query:  RSRSSSRRKKRDHVNNNNHNNNATHHSAAV-----DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI
        R     RRKKR+H NN++        ++AV     ++N ISMTNLLVSD YLSEILS+KASTH  ERRRGRVGVWRPHLQSICESPSDI
Subjt:  RSRSSSRRKKRDHVNNNNHNNNATHHSAAV-----DSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI

A0A6J1KLR7 rhoGEF domain-containing protein gxcI-like1.3e-6774.51Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD----DDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSS        DD + +PKIVIVPPEADLQRGKIYFLMPLPPNPDK 
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDD----DDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKA

Query:  RSRSSSRRKKRDHVNNNNHNNNATHHS------------AAVDSN--------AISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICES
        RSRSSSRRKKR  V NNN+ NN  HHS            A  D N        +ISM+NL VSDQYLSEILSEKASTH  ERRRGRVGVWRPHL+SICES
Subjt:  RSRSSSRRKKRDHVNNNNHNNNATHHS------------AAVDSN--------AISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICES

Query:  PSDI
        PS +
Subjt:  PSDI

F6HM99 Uncharacterized protein6.4e-6271.35Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRS
        MKN+IRCCISCILPCGALDV+RIVHSNG+VEEISG+I AS++MKAHPKHVLKKPSSS ++     VPKIV+VPP+A+LQRGKIYFLMP+PP P+K RSRS
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRS

Query:  SSRRKKRDHVNNNNHNNNATHHSAAVDSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPS
        S+R+K+RD  +N   N N  HH +   +N ISMTNLL+SD+YLSEILSEK ST   +RRRGRVGVWRPHL+SI E+PS
Subjt:  SSRRKKRDHVNNNNHNNNATHHSAAVDSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06980.1 unknown protein4.2e-2942.78Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRS
        M NS+RCC++C+LPCGALD+IRIVH NGYVEEI+ SI A ++++A+P HVL KP S         V KI+I+ PE++L+RG IYFL+P    P+K R R 
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRS

Query:  SSRRKKRDHVNNNNHNNNATHHSAAVDSNAISMTNLLVSDQYLSEILSEKAS--THHCERRRGR---VGVWRPHLQSICE
         + R+K+   N  N + +A       D   + +      ++YL E++S  ++   H   RR  R   V  WRP L SI E
Subjt:  SSRRKKRDHVNNNNHNNNATHHSAAVDSNAISMTNLLVSDQYLSEILSEKAS--THHCERRRGR---VGVWRPHLQSICE

AT1G29195.1 unknown protein1.6e-4456.25Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTV---PKIVIVPPEADLQRGKIYFLMPLPPNPDKAR
        MK +IRCCI+CILPCGALDVIRIVHSNG+VEEISG+I AS++MKAHPKHVLKKPSS   D D   V    KIVIVPPEA+LQRGKIYFLMP   + DK  
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTV---PKIVIVPPEADLQRGKIYFLMPLPPNPDKAR

Query:  SRSSSRR---------KKRDHVNNNNHNNNATHHSAAVDSNAISMTN-----LLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICE
             RR         KKR      + + +   +    +SN +   N     L+ SD+YL+EILSEK +T   +RR+GRVGVWRPHL+SI E
Subjt:  SRSSSRR---------KKRDHVNNNNHNNNATHHSAAVDSNAISMTN-----LLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICE

AT2G30230.1 unknown protein7.1e-2939.44Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMP--LPPNPDKARS
        M NS+RCC++C+LPCGALD+IRIVH NG+V+EI+  + A ++++A+P HVL KP S         V KI+I+ PE++L+RG IYFL+P    P   K + 
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMP--LPPNPDKARS

Query:  RSSSRRKKRDHVNNNNHNNNATHHSAAVDSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGR---VGVWRPHLQSICE
        R   R +K+   + N+ N++    +  +D + +++    + D  LSE +S     +   R+  R   V  WRPHL SI E
Subjt:  RSSSRRKKRDHVNNNNHNNNATHHSAAVDSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGR---VGVWRPHLQSICE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAACAGCATAAGATGCTGCATATCCTGCATTTTACCATGCGGAGCTCTTGATGTAATTCGCATAGTCCATTCCAATGGCTACGTCGAAGAAATCAGCGGCTCCAT
CAAAGCCTCCGATGTCATGAAAGCTCATCCCAAACACGTCCTTAAAAAGCCTTCCTCCTCCGTCGACGATGACGATCCCACCACCGTCCCGAAGATCGTCATCGTCCCGC
CCGAGGCCGACCTTCAGCGCGGTAAGATTTATTTCCTCATGCCCCTGCCTCCCAACCCCGACAAGGCCCGCTCCCGATCCTCATCCAGGAGAAAAAAGAGAGATCATGTT
AACAACAACAACCACAACAACAACGCTACCCACCACTCTGCTGCTGTCGATAGCAACGCAATTTCCATGACGAATCTCCTCGTTTCCGACCAGTACCTCTCCGAAATCCT
CTCCGAAAAGGCCTCGACCCACCACTGCGAACGACGACGCGGCCGCGTCGGCGTCTGGAGACCTCACTTGCAGAGCATTTGTGAGTCCCCCAGTGATATCTAG
mRNA sequenceShow/hide mRNA sequence
GAAAAATAAAGAATGAATGAATGAATGTGAAGTCCAAAATATAAAAACATTATTAATTAATAAAGGAAGGGAAAAAAAGAAAAAATGATGAAGCTCTCACTCTCTCTCGA
TCTTTTGATCTCCCCCTTCTCCCCTCTCTCAATTCTTCTCTTTCCTCCAAGAAATTGACCAAAAAAAGAAGCAATGAAAAACAGCATAAGATGCTGCATATCCTGCATTT
TACCATGCGGAGCTCTTGATGTAATTCGCATAGTCCATTCCAATGGCTACGTCGAAGAAATCAGCGGCTCCATCAAAGCCTCCGATGTCATGAAAGCTCATCCCAAACAC
GTCCTTAAAAAGCCTTCCTCCTCCGTCGACGATGACGATCCCACCACCGTCCCGAAGATCGTCATCGTCCCGCCCGAGGCCGACCTTCAGCGCGGTAAGATTTATTTCCT
CATGCCCCTGCCTCCCAACCCCGACAAGGCCCGCTCCCGATCCTCATCCAGGAGAAAAAAGAGAGATCATGTTAACAACAACAACCACAACAACAACGCTACCCACCACT
CTGCTGCTGTCGATAGCAACGCAATTTCCATGACGAATCTCCTCGTTTCCGACCAGTACCTCTCCGAAATCCTCTCCGAAAAGGCCTCGACCCACCACTGCGAACGACGA
CGCGGCCGCGTCGGCGTCTGGAGACCTCACTTGCAGAGCATTTGTGAGTCCCCCAGTGATATCTAGAAATTACCGGCTACTCAGGTTGTGGGTTGTTTTTTTTTTCCTTT
TTAACATATATTATTATATCATCATTTTCTTTTACCTCATGATCATTTATTTTACAAAAAATGTTCATATATCCCTTTTATTTTATCTTCCAAATTTACCAGATTGATTA
TTGAAGAGAGGGGATCTGAAATAAATTAATTACTTTTTAGAGAGAGCCCACTTTTGATCACTGTGTGTGAGAATTCATGTGTGTGTGTGTGTGTGTTTGCATGAACAAAA
GAACATAATTTTGAGTGATTGTGATATATGATGATATGGTTGTACAGCTACAAAATAATCTATACCCA
Protein sequenceShow/hide protein sequence
MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKASDVMKAHPKHVLKKPSSSVDDDDPTTVPKIVIVPPEADLQRGKIYFLMPLPPNPDKARSRSSSRRKKRDHV
NNNNHNNNATHHSAAVDSNAISMTNLLVSDQYLSEILSEKASTHHCERRRGRVGVWRPHLQSICESPSDI