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Sed0005340 (gene) of Chayote v1 genome

Gene IDSed0005340
OrganismSechium edule (Chayote v1)
DescriptionProtein GL2-INTERACTING REPRESSOR 2
Genome locationLG01:58483906..58484653
RNA-Seq ExpressionSed0005340
SyntenySed0005340
Gene Ontology termsGO:0080147 - root hair cell development (biological process)
GO:0005515 - protein binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061725.1 hypothetical protein E6C27_scaffold212G001000 [Cucumis melo var. makuwa]1.7e-2772.07Show/hide
Query:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSERE-----VEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCK
        MSKR RSSE  V+LRVNLN+SP TSSSSSSV+ FG   GSGSGS        SCLS    +     +EEIITRSMMLVGCPGCFMYVMLT+KSSQCPKCK
Subjt:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSERE-----VEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCK

Query:  NNVFLDFFKQQ
        NNVFLDFFKQQ
Subjt:  NNVFLDFFKQQ

KAG6570472.1 NAC domain-containing protein 40, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2569.81Show/hide
Query:  MSKRPRSSE-LVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFL
        MSKR RSSE  V+LRVNLNR P+ ++SS           SGSGSSSD+SVE+SCL       EEIITRSMMLVGCPGCFMYVMLT+KSSQCPKC NNVFL
Subjt:  MSKRPRSSE-LVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFL

Query:  DFFKQQ
        DFFK Q
Subjt:  DFFKQQ

KAG6605971.1 hypothetical protein SDJN03_03288, partial [Cucurbita argyrosperma subsp. sororia]3.3e-2874.31Show/hide
Query:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEE---IITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN
        MSKRPRSSE  V LRV++NRSP TSS S    +FG   GS SG  SD+SVESSCLS  + EVEE   I+TRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN
Subjt:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEE---IITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN

Query:  VFLDFFKQQ
        VFLDFF QQ
Subjt:  VFLDFFKQQ

KAG7035922.1 hypothetical protein SDJN02_02722, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-2874.31Show/hide
Query:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEE---IITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN
        MSKRPRSSE  V LRV++NRSP TSS S    +FG   GS SG  SD+SVESSCLS  + EVEE   I+TRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN
Subjt:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEE---IITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN

Query:  VFLDFFKQQ
        VFLDFF QQ
Subjt:  VFLDFFKQQ

KGN48041.1 hypothetical protein Csa_002820 [Cucumis sativus]4.0e-2975.45Show/hide
Query:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSERE----VEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKN
        MSKR RSSE  V+LRVNLNRSP  SSSSSSV+ F    GSGSG SS++SV +SCLS    E    +EEIITRSMMLVGCPGCFMYVMLT+KSSQCPKCKN
Subjt:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSERE----VEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKN

Query:  NVFLDFFKQQ
        NVFLDFFKQQ
Subjt:  NVFLDFFKQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KJX5 Uncharacterized protein1.9e-2975.45Show/hide
Query:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSERE----VEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKN
        MSKR RSSE  V+LRVNLNRSP  SSSSSSV+ F    GSGSG SS++SV +SCLS    E    +EEIITRSMMLVGCPGCFMYVMLT+KSSQCPKCKN
Subjt:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSERE----VEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKN

Query:  NVFLDFFKQQ
        NVFLDFFKQQ
Subjt:  NVFLDFFKQQ

A0A5D3BBS4 Uncharacterized protein8.0e-2872.07Show/hide
Query:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSERE-----VEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCK
        MSKR RSSE  V+LRVNLN+SP TSSSSSSV+ FG   GSGSGS        SCLS    +     +EEIITRSMMLVGCPGCFMYVMLT+KSSQCPKCK
Subjt:  MSKRPRSSEL-VDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSERE-----VEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCK

Query:  NNVFLDFFKQQ
        NNVFLDFFKQQ
Subjt:  NNVFLDFFKQQ

A0A660KQ11 Uncharacterized protein1.2e-1045.95Show/hide
Query:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITR------SMMLVGCPGCFMYVMLTDKSSQCPKCK
        MS+R  S +L +L +NL+     + +  S N+      S S SSSDMSVE SC+SS   E      R      SMMLVGCP C MYVML+D + +CPKCK
Subjt:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITR------SMMLVGCPGCFMYVMLTDKSSQCPKCK

Query:  NNVFLDFFKQQ
        + V LDF K++
Subjt:  NNVFLDFFKQQ

A0A7N2KLV1 Uncharacterized protein8.9e-1144.55Show/hide
Query:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEI----ITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN
        MS+RP S EL DL +NL+  P  +S   S N+        +  SSDMS+E SC+SS   E  +      + SM+LVGCP C MYVML++   +CPKCK+ 
Subjt:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEI----ITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN

Query:  VFLDFFKQQH
        V LDF K+++
Subjt:  VFLDFFKQQH

A0A7N2R1P8 Uncharacterized protein3.1e-1145.45Show/hide
Query:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEI----ITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN
        MS+RP S EL DL++NL+  P  +S   S N+        +  SSDMS+ESSC+SS   E  +      + SM+LVGCP C MYVML++   +CPKCK+ 
Subjt:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEI----ITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNN

Query:  VFLDFFKQQH
          LDFFK+++
Subjt:  VFLDFFKQQH

SwissProt top hitse value%identityAlignment
Q9FNI1 Protein GL2-INTERACTING REPRESSOR 12.8e-0942.42Show/hide
Query:  LRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEII-------TRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFKQ
        L + LN SP TSS    V        S S ++S  S  SSC+SS   + E  +       T SM+LVGCP C MYVML++   +CPKCK+ V LDF  +
Subjt:  LRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEII-------TRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFKQ

Q9SRN4 Protein GL2-INTERACTING REPRESSOR 23.5e-1240.38Show/hide
Query:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLD
        MS+R ++   ++LR+NL+  P+ +S  S V          S + S+ +  SSC+SS   + E     SM+LVGCP C MYVML+D   +CPKCK+ V LD
Subjt:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLD

Query:  FFKQ
        F ++
Subjt:  FFKQ

Arabidopsis top hitse value%identityAlignment
AT3G11600.1 unknown protein2.5e-1340.38Show/hide
Query:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLD
        MS+R ++   ++LR+NL+  P+ +S  S V          S + S+ +  SSC+SS   + E     SM+LVGCP C MYVML+D   +CPKCK+ V LD
Subjt:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLD

Query:  FFKQ
        F ++
Subjt:  FFKQ

AT5G06270.1 unknown protein2.0e-1042.42Show/hide
Query:  LRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEII-------TRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFKQ
        L + LN SP TSS    V        S S ++S  S  SSC+SS   + E  +       T SM+LVGCP C MYVML++   +CPKCK+ V LDF  +
Subjt:  LRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEII-------TRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFKQ

AT5G22270.1 unknown protein9.5e-0532.71Show/hide
Query:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITRSMMLVGCPGCFMYVMLT-DKSSQCPKCKNNVFL
        M++   S+  +DL++N+  SP+  SS         LL   S SS         L S E E      +SM++VGCP C MY++ + +   +CP+C ++V L
Subjt:  MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITRSMMLVGCPGCFMYVMLT-DKSSQCPKCKNNVFL

Query:  DFFKQQH
        DF    H
Subjt:  DFFKQQH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAGAGGCCCCGAAGTAGCGAGCTGGTGGACTTGAGGGTGAACCTGAACCGGTCGCCAGCAACCTCATCTTCTTCTTCATCGGTGAACCTATTCGGAGGATTGTT
GGGGTCGGGATCGGGATCATCATCAGACATGTCTGTGGAGAGTTCGTGCCTGTCGTCGTCGGAGAGGGAGGTGGAAGAGATAATAACAAGGTCGATGATGCTGGTCGGGT
GTCCCGGGTGTTTCATGTACGTGATGCTCACGGACAAGAGCTCCCAATGCCCAAAATGCAAGAACAATGTGTTTCTTGATTTCTTCAAGCAACAACATGGCTAG
mRNA sequenceShow/hide mRNA sequence
TCTTCAATTTTCTCACTTCCAATAGACCATCACACTTATACTACGCTGAAATTGAGGATCAAAATGAGCAAGAGGCCCCGAAGTAGCGAGCTGGTGGACTTGAGGGTGAA
CCTGAACCGGTCGCCAGCAACCTCATCTTCTTCTTCATCGGTGAACCTATTCGGAGGATTGTTGGGGTCGGGATCGGGATCATCATCAGACATGTCTGTGGAGAGTTCGT
GCCTGTCGTCGTCGGAGAGGGAGGTGGAAGAGATAATAACAAGGTCGATGATGCTGGTCGGGTGTCCCGGGTGTTTCATGTACGTGATGCTCACGGACAAGAGCTCCCAA
TGCCCAAAATGCAAGAACAATGTGTTTCTTGATTTCTTCAAGCAACAACATGGCTAGCTTCACAACTCTCTACTACAATTATTTGCTTCTATTATTATTACTACTATTAT
TATCATTATTAGTATTAGTATAGTTTCATTCTCATCAATATTTCATAATAATTCCCACTAATTTTCTATGTTGTAGGCAATCTAGGTTTGACTTTATGAATGAATTGACT
AGATATCCTTTCCTTTCTCGCTTTTTCCAGACCTTGCCTTGACATTTACTGTCACTAACATGCAGCTATGCATATGTGGGTCTGATTTTTTTACATTTTTTT
Protein sequenceShow/hide protein sequence
MSKRPRSSELVDLRVNLNRSPATSSSSSSVNLFGGLLGSGSGSSSDMSVESSCLSSSEREVEEIITRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFKQQHG