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Sed0005352 (gene) of Chayote v1 genome

Gene IDSed0005352
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 22-like
Genome locationLG07:7030415..7032221
RNA-Seq ExpressionSed0005352
SyntenySed0005352
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140891.1 arabinogalactan peptide 22-like [Momordica charantia]2.6e-1580.3Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MAV RACFGIYA I AI L+V++LPVS AEHS  PAPAP+SDGTTIDQ IA ILMLLALVLTYIIH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

XP_022945187.1 arabinogalactan peptide 22-like [Cucurbita moschata]9.0e-1681.82Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MAVLRACFGIYAVI AI  YVV+LPVS AEH+  PAPAPTSDGT IDQ IA ILMLLAL LTYIIH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

XP_022968216.1 arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]1.1e-1377.94Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEH--SFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MA LRACFG+YAVI AI  YVV+LPVS AEH  S  PAPAPTSDGT IDQ IA ILMLLAL LTYIIH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEH--SFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

XP_022968217.1 arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]1.1e-1377.94Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEH--SFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MA LRACFG+YAVI AI  YVV+LPVS AEH  S  PAPAPTSDGT IDQ IA ILMLLAL LTYIIH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEH--SFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

XP_038898060.1 arabinogalactan protein 41-like [Benincasa hispida]9.9e-1574.24Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MAVL+ACFGIYA +   + YVV LPVS AE S  PAPAPTSDGTTIDQ IA +LML+ALVLTYIIH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

TrEMBL top hitse value%identityAlignment
A0A5D3BTZ5 Arabinogalactan peptide 221.5e-1373.13Show/hide
Query:  MAVLRA-CFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MAVLRA CFGIYA +   + YV+ LPVS AE S  PAPAPTSDGTTIDQ IA +LML+ALVLTYIIH
Subjt:  MAVLRA-CFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

A0A6J1CHE0 arabinogalactan peptide 22-like1.3e-1580.3Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MAV RACFGIYA I AI L+V++LPVS AEHS  PAPAP+SDGTTIDQ IA ILMLLALVLTYIIH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

A0A6J1G081 arabinogalactan peptide 22-like4.4e-1681.82Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MAVLRACFGIYAVI AI  YVV+LPVS AEH+  PAPAPTSDGT IDQ IA ILMLLAL LTYIIH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

A0A6J1HT15 arabinogalactan peptide 22-like isoform X25.3e-1477.94Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEH--SFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MA LRACFG+YAVI AI  YVV+LPVS AEH  S  PAPAPTSDGT IDQ IA ILMLLAL LTYIIH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEH--SFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

A0A6J1HU96 arabinogalactan peptide 22-like isoform X15.3e-1477.94Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEH--SFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MA LRACFG+YAVI AI  YVV+LPVS AEH  S  PAPAPTSDGT IDQ IA ILMLLAL LTYIIH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEH--SFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 164.6e-0750.85Show/hide
Query:  FGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        F +++ +FA++L +          S  PAPAPTSDGT+IDQ IA +LM++ALVLTY+IH
Subjt:  FGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

Q8L9T8 Arabinogalactan protein 411.4e-0853.03Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        M+  R  FG+  ++   +++ ++LP++ A+ S  PAPAPTSDGTTIDQ IA +LML+ALVLTY+IH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 227.2e-0853.03Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MA L+    I AV   +++ V++LP++++ HS  PAPAPTSDGT+IDQ IA +LM++AL LTY IH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

Q9M373 Arabinogalactan protein 201.4e-0652.46Show/hide
Query:  ACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        A   ++A +FA     V+ P + A+ S  PAP+PTSDGT+IDQ IA +LM++ALVLTY+IH
Subjt:  ACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.3e-0850.85Show/hide
Query:  FGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        F +++ +FA++L +          S  PAPAPTSDGT+IDQ IA +LM++ALVLTY+IH
Subjt:  FGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

AT3G61640.1 arabinogalactan protein 209.6e-0852.46Show/hide
Query:  ACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        A   ++A +FA     V+ P + A+ S  PAP+PTSDGT+IDQ IA +LM++ALVLTY+IH
Subjt:  ACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

AT5G24105.1 arabinogalactan protein 411.0e-0953.03Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        M+  R  FG+  ++   +++ ++LP++ A+ S  PAPAPTSDGTTIDQ IA +LML+ALVLTY+IH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 225.1e-0953.03Show/hide
Query:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH
        MA L+    I AV   +++ V++LP++++ HS  PAPAPTSDGT+IDQ IA +LM++AL LTY IH
Subjt:  MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTTTTGCTATTTTATTATATGTTGTTGTTTTGCCTGTTTCTGAAGCTGAACATTCCTTTCCTCCAGCTCC
TGCTCCCACTAGTGATGGCACAACAATAGACCAAAGCATAGCATGCATTCTCATGCTGCTGGCTTTAGTGCTTACTTATATCATCCACTGA
mRNA sequenceShow/hide mRNA sequence
CTGGCTTCACAGATGAGCTAAAAAACAAACAAAGAATTAGCTTACAGTCTATTTTTAGGTAAAGTAAAATAAGATCCAGCAAAGCAAATGCATAAAAAAGAAGGAATCTT
TAAGAGAGAGAATGAAGAGTCACAAATGGTATTAAACCCTAATCCCTCCATTGCCATCCTCATTCACAGCTTTCAATTTTCTTCTTGTTCTTGTGAGGAAGAAAGGGCAT
TGGATTTATAAACACCAAAAACAGAGAGATTTAGAAATGGCTGTTTTGAGGGCTTGTTTTGGAATCTATGCTGTGATTTTTGCTATTTTATTATATGTTGTTGTTTTGCC
TGTTTCTGAAGCTGAACATTCCTTTCCTCCAGCTCCTGCTCCCACTAGTGATGGCACAACAATAGACCAAAGCATAGCATGCATTCTCATGCTGCTGGCTTTAGTGCTTA
CTTATATCATCCACTGATGCAACTTTTGAAAGCACCAAAAACAGAGGAAGAATTTAACATCATTCCATTCCAAACATGTTTTGCATTTTCAAGTGTATGAGATGAAAGGG
AAAGGATGTGGTGTTTTAAATTGGGTCATTCTATTACCATTTTTTTAAAAATGATTAGCAGAGATTTCATTTGTAGAAAGTCAATTGTTGAATTATATATTTATCATTCT
TTTTTCTTGAGTGATAACTCTTTCATGTGTGTATTCTAAGTTTCTAAAATTTCTCATCAAAGGAAAAGTGCCAC
Protein sequenceShow/hide protein sequence
MAVLRACFGIYAVIFAILLYVVVLPVSEAEHSFPPAPAPTSDGTTIDQSIACILMLLALVLTYIIH