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Sed0005364 (gene) of Chayote v1 genome

Gene IDSed0005364
OrganismSechium edule (Chayote v1)
DescriptionRNA/RNP complex-1-interacting phosphatase, putative
Genome locationLG04:38175580..38175936
RNA-Seq ExpressionSed0005364
SyntenySed0005364
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048367.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa]2.3e-3871.43Show/hide
Query:  MAALSAGHRHF---IGGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKE-QERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLS
        MAALSAGHRHF   + G+A +QFRNR  SPRS  + C HN+DPSD    S EKTKK+ QERK+ + GFV+R EKMG++LKEKL P+RKGDWKDLTLMSLS
Subjt:  MAALSAGHRHF---IGGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKE-QERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLS

Query:  FAVYVYISQKIVCAYFVWMSMPKQMW
        FAVYVYISQKIVCAYF+WMSMPK +W
Subjt:  FAVYVYISQKIVCAYFVWMSMPKQMW

KAG6581569.1 hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia]8.8e-3873.55Show/hide
Query:  MAALSAGHRHFIGGAAALQFRNRINSPRSTVLFC--RHNEDPSDSS-EKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYV
        MAALSAGHRHF     A+QF NR  SPR  VL C   HN+DPSDSS EKTKK+QE KQ + GF++R +KMGM+LKEKL P+RKGDWKD+TLMSLSFAVYV
Subjt:  MAALSAGHRHFIGGAAALQFRNRINSPRSTVLFC--RHNEDPSDSS-EKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYV

Query:  YISQKIVCAYFVWMSMPKQMW
        YISQKIVCAYF+WMSMPKQ+W
Subjt:  YISQKIVCAYFVWMSMPKQMW

KAG6606884.1 hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia]4.2e-4075.41Show/hide
Query:  MAALSAGHRHFIGGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVY
        MAALSAGHR+F  G+AA+ FRNR  SPRS VL C HN++PSD    S EK KKEQE+KQ + GFV+R EKMG++LKEKL P+RKGDWKDLTLMSLSFAVY
Subjt:  MAALSAGHRHFIGGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVY

Query:  VYISQKIVCAYFVWMSMPKQMW
        VYISQKIVCAYFVWMSMPKQ+W
Subjt:  VYISQKIVCAYFVWMSMPKQMW

KGN58582.1 hypothetical protein Csa_001602 [Cucumis sativus]3.3e-3770.63Show/hide
Query:  MAALSAGHRHFI---GGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKE-QERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLS
        MAALSAGHRHF     G+A L FRNR  SPRS  + C HN+DPSD    S EKTKK+ QERK+ + GFV+R EKMG++LKEKL P+RKGDWKDLTLMSLS
Subjt:  MAALSAGHRHFI---GGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKE-QERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLS

Query:  FAVYVYISQKIVCAYFVWMSMPKQMW
        FAVYVYISQKIVCAYF+WM+MPK +W
Subjt:  FAVYVYISQKIVCAYFVWMSMPKQMW

XP_022152649.1 uncharacterized protein LOC111020315 [Momordica charantia]3.7e-3672.73Show/hide
Query:  MAALSAGHRHFI-GGAAALQFRNRINSPRSTVLFCRHNEDPSDSSEKTKKEQERKQRMV-GFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVY
        MAALSAGHRHF   GAAA Q R R +SP+S VL CRH++DPS+  E +K+ +ERKQ+ + GFVER EKMGM+LKEKL P+RKGDWKD+ LMSLSFAVYVY
Subjt:  MAALSAGHRHFI-GGAAALQFRNRINSPRSTVLFCRHNEDPSDSSEKTKKEQERKQRMV-GFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVY

Query:  ISQKIVCAYFVWMSMPK-QMW
        ISQKIVCAYFVWMSMPK Q+W
Subjt:  ISQKIVCAYFVWMSMPK-QMW

TrEMBL top hitse value%identityAlignment
A0A0A0LD14 Uncharacterized protein1.6e-3770.63Show/hide
Query:  MAALSAGHRHFI---GGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKE-QERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLS
        MAALSAGHRHF     G+A L FRNR  SPRS  + C HN+DPSD    S EKTKK+ QERK+ + GFV+R EKMG++LKEKL P+RKGDWKDLTLMSLS
Subjt:  MAALSAGHRHFI---GGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKE-QERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLS

Query:  FAVYVYISQKIVCAYFVWMSMPKQMW
        FAVYVYISQKIVCAYF+WM+MPK +W
Subjt:  FAVYVYISQKIVCAYFVWMSMPKQMW

A0A2R6QKR0 Recombination protein like6.8e-2053.33Show/hide
Query:  MAALSAGHRHFIGGAAALQFRNRIN-SPRS-TVLFCRHNEDPSDSSEKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVY
        MA LS GH  F G     Q + R N SPR+ + + C+       SS +TKKE+E+KQ +       E+ G +LK+ L P++KGDWKDL LMSLSFAVYVY
Subjt:  MAALSAGHRHFIGGAAALQFRNRIN-SPRS-TVLFCRHNEDPSDSSEKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVY

Query:  ISQKIVCAYFVWMSMPKQMW
        ISQKIVCAY VW+SM KQ W
Subjt:  ISQKIVCAYFVWMSMPKQMW

A0A5D3BX35 Putative RNA/RNP complex-1-interacting phosphatase1.1e-3871.43Show/hide
Query:  MAALSAGHRHF---IGGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKE-QERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLS
        MAALSAGHRHF   + G+A +QFRNR  SPRS  + C HN+DPSD    S EKTKK+ QERK+ + GFV+R EKMG++LKEKL P+RKGDWKDLTLMSLS
Subjt:  MAALSAGHRHF---IGGAAALQFRNRINSPRSTVLFCRHNEDPSD----SSEKTKKE-QERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLS

Query:  FAVYVYISQKIVCAYFVWMSMPKQMW
        FAVYVYISQKIVCAYF+WMSMPK +W
Subjt:  FAVYVYISQKIVCAYFVWMSMPKQMW

A0A660KVF0 Uncharacterized protein2.8e-2154.03Show/hide
Query:  MAALSAGHRHFIGGAAALQFRNRINSPRSTVLFCRHNEDPSDSSE-KTKKEQERKQRM-----VGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFA
        MAALS GH  F       Q   + +SP + +L C     P DSS  +TKKE+ +++ +     VGF    EK G  L+E L P++KGDWKDLTLMSLSFA
Subjt:  MAALSAGHRHFIGGAAALQFRNRINSPRSTVLFCRHNEDPSDSSE-KTKKEQERKQRM-----VGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFA

Query:  VYVYISQKIVCAYFVWMSMPKQMW
        VYVYISQK+VCAYF WMSMPKQ+W
Subjt:  VYVYISQKIVCAYFVWMSMPKQMW

A0A6J1DGN1 uncharacterized protein LOC1110203151.8e-3672.73Show/hide
Query:  MAALSAGHRHFI-GGAAALQFRNRINSPRSTVLFCRHNEDPSDSSEKTKKEQERKQRMV-GFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVY
        MAALSAGHRHF   GAAA Q R R +SP+S VL CRH++DPS+  E +K+ +ERKQ+ + GFVER EKMGM+LKEKL P+RKGDWKD+ LMSLSFAVYVY
Subjt:  MAALSAGHRHFI-GGAAALQFRNRINSPRSTVLFCRHNEDPSDSSEKTKKEQERKQRMV-GFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVY

Query:  ISQKIVCAYFVWMSMPK-QMW
        ISQKIVCAYFVWMSMPK Q+W
Subjt:  ISQKIVCAYFVWMSMPK-QMW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52070.1 unknown protein4.8e-1042Show/hide
Query:  RNRINSPRSTVLFCRHNEDPSDSSEKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVYISQKIVCAYFVW--MSMPKQMW
        R+ + S R  V+ CR  + P ++    ++   R       +    K+G  LK +   ++KGD KDL LMSLSFAVYVYISQ +VCAYF W  +S PK  W
Subjt:  RNRINSPRSTVLFCRHNEDPSDSSEKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVYISQKIVCAYFVW--MSMPKQMW

AT3G52070.2 unknown protein5.3e-0942.27Show/hide
Query:  RNRINSPRSTVLFCRHNEDPSDSSEKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVYISQKIVCAYFVW--MSMPK
        R+ + S R  V+ CR  + P ++    ++   R       +    K+G  LK +   ++KGD KDL LMSLSFAVYVYISQ +VCAYF W  +S PK
Subjt:  RNRINSPRSTVLFCRHNEDPSDSSEKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVYISQKIVCAYFVW--MSMPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCTCTCTCCGCCGGCCACCGTCATTTCATCGGCGGCGCCGCCGCCCTGCAGTTCAGAAACAGAATTAATAGCCCCAGATCGACCGTCCTTTTCTGCCGCCACAA
CGAAGATCCTTCAGATTCTTCAGAGAAAACGAAGAAAGAGCAAGAAAGAAAACAGAGGATGGTAGGATTTGTGGAGAGATGTGAGAAGATGGGAATGAAATTGAAGGAGA
AACTGAGGCCTGAGAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTTTGTGCCTATTTTGTTTGG
ATGTCAATGCCAAAACAAATGTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCTCTCTCCGCCGGCCACCGTCATTTCATCGGCGGCGCCGCCGCCCTGCAGTTCAGAAACAGAATTAATAGCCCCAGATCGACCGTCCTTTTCTGCCGCCACAA
CGAAGATCCTTCAGATTCTTCAGAGAAAACGAAGAAAGAGCAAGAAAGAAAACAGAGGATGGTAGGATTTGTGGAGAGATGTGAGAAGATGGGAATGAAATTGAAGGAGA
AACTGAGGCCTGAGAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTTTGTGCCTATTTTGTTTGG
ATGTCAATGCCAAAACAAATGTGGTAG
Protein sequenceShow/hide protein sequence
MAALSAGHRHFIGGAAALQFRNRINSPRSTVLFCRHNEDPSDSSEKTKKEQERKQRMVGFVERCEKMGMKLKEKLRPERKGDWKDLTLMSLSFAVYVYISQKIVCAYFVW
MSMPKQMW