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Sed0005396 (gene) of Chayote v1 genome

Gene IDSed0005396
OrganismSechium edule (Chayote v1)
DescriptionRibonuclease H
Genome locationLG04:8198297..8199085
RNA-Seq ExpressionSed0005396
SyntenySed0005396
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031753.1 gag protease polyprotein [Cucumis melo var. makuwa]2.1e-5753.14Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+ + SP T   R SAF+RLS+S T  ++  + S    SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E E +    +H+T+ E ++ ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.2e-5753.56Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+ + SP T   R SAF+RLS+S T  ++  + S    SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E E +    +H+TI E ++ ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

KAA0065377.1 uncharacterized protein E6C27_scaffold17G00390 [Cucumis melo var. makuwa]1.2e-5753.56Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIER----NTTSSSSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+++ SPT+   R SAF+RLS+S T  ++    + ++ SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIER----NTTSSSSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E+E +     H+TI E +E ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]1.2e-5753.56Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+ + SP T   R SAF+RLS+S T  ++  + S    SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E E +    +H+TI E ++ ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]1.2e-5753.56Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+ + SP T   R SAF+RLS+S T  ++  + S    SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E E +    +H+TI E ++ ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

TrEMBL top hitse value%identityAlignment
A0A5A7SND9 Gag protease polyprotein1.0e-5753.14Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+ + SP T   R SAF+RLS+S T  ++  + S    SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E E +    +H+T+ E ++ ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

A0A5A7TZU9 Ribonuclease H5.9e-5853.56Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+ + SP T   R SAF+RLS+S T  ++  + S    SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E E +    +H+TI E ++ ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

A0A5A7VE63 Uncharacterized protein5.9e-5853.56Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIER----NTTSSSSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+++ SPT+   R SAF+RLS+S T  ++    + ++ SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIER----NTTSSSSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E+E +     H+TI E +E ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

A0A5D3BIH8 Uncharacterized protein5.9e-5853.56Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+ + SP T   R SAF+RLS+S T  ++  + S    SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E E +    +H+TI E ++ ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

A0A5D3D1E5 Ribonuclease H5.9e-5853.56Show/hide
Query:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE
        +F+R++ +I  ++   ST   TR S FQRL+   +K+ + SP T   R SAF+RLS+S T  ++  + S    SS +  DE+I S  PSRMKRKMFV+V 
Subjt:  IFERLNKAIG-EARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSS----SSKIRSDEDICSVVPSRMKRKMFVTVE

Query:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS
        TEGSL+VKRHDV+FT P +   E E +    +H+TI E ++ ++ EED + APL LED  QST+DELKE+NLGT EEPRPTFIST L+  ++ EY+ LL 
Subjt:  TEGSLRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLS

Query:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ
         YKD+FAWSYKE+PGLDPKVAVH LA+KP  RP+KQ Q+
Subjt:  TYKDIFAWSYKEIPGLDPKVAVHHLAVKPGSRPIKQTQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCTACCACTAATGAGACACAATTACCTATTTTTGAAAGATTGAATAAAGCCATAGGAGAGGCGAGAACATCCTCGACTTCAGGTGGAACACGACCATCCACCTT
TCAAAGGTTAAGTAAGCCGAAAAGGAAAATAGAAAATACAAGTCCAACTACTGATAAGGCCCGACCGTCGGCTTTTCAAAGATTAAGCATAAGCACGACAAATATTGAAA
GGAATACCACATCTTCATCGAGTAAGATAAGAAGCGATGAAGACATATGCAGTGTTGTTCCATCCCGTATGAAGAGAAAAATGTTTGTCACTGTTGAAACAGAAGGTTCG
CTGAGAGTAAAGCGACATGATGTTATCTTCACCAACCCAAGGGAAGAGAATATAGAGCAAGAGGAAAATGAGTTTTCGGGTCATCACATCACTATTGTAGAAGAGACAGA
GGTTGAGATGGGTGAAGAGGATGTTGATGAAGCTCCACTTCCATTAGAAGATTGCATTCAGTCGACTGTAGACGAGCTTAAAGAAATAAATCTTGGTACGAATGAGGAGC
CACGCCCAACTTTCATAAGCACGTTACTTACGCCCGAGGAAGATACCGAGTATCTACGTCTACTTTCTACATACAAGGACATCTTTGCCTGGTCATACAAGGAAATTCCG
GGACTTGATCCAAAAGTTGCAGTCCATCATTTAGCTGTTAAACCTGGATCTCGACCGATCAAGCAAACTCAACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCTACCACTAATGAGACACAATTACCTATTTTTGAAAGATTGAATAAAGCCATAGGAGAGGCGAGAACATCCTCGACTTCAGGTGGAACACGACCATCCACCTT
TCAAAGGTTAAGTAAGCCGAAAAGGAAAATAGAAAATACAAGTCCAACTACTGATAAGGCCCGACCGTCGGCTTTTCAAAGATTAAGCATAAGCACGACAAATATTGAAA
GGAATACCACATCTTCATCGAGTAAGATAAGAAGCGATGAAGACATATGCAGTGTTGTTCCATCCCGTATGAAGAGAAAAATGTTTGTCACTGTTGAAACAGAAGGTTCG
CTGAGAGTAAAGCGACATGATGTTATCTTCACCAACCCAAGGGAAGAGAATATAGAGCAAGAGGAAAATGAGTTTTCGGGTCATCACATCACTATTGTAGAAGAGACAGA
GGTTGAGATGGGTGAAGAGGATGTTGATGAAGCTCCACTTCCATTAGAAGATTGCATTCAGTCGACTGTAGACGAGCTTAAAGAAATAAATCTTGGTACGAATGAGGAGC
CACGCCCAACTTTCATAAGCACGTTACTTACGCCCGAGGAAGATACCGAGTATCTACGTCTACTTTCTACATACAAGGACATCTTTGCCTGGTCATACAAGGAAATTCCG
GGACTTGATCCAAAAGTTGCAGTCCATCATTTAGCTGTTAAACCTGGATCTCGACCGATCAAGCAAACTCAACAGTGA
Protein sequenceShow/hide protein sequence
MSATTNETQLPIFERLNKAIGEARTSSTSGGTRPSTFQRLSKPKRKIENTSPTTDKARPSAFQRLSISTTNIERNTTSSSSKIRSDEDICSVVPSRMKRKMFVTVETEGS
LRVKRHDVIFTNPREENIEQEENEFSGHHITIVEETEVEMGEEDVDEAPLPLEDCIQSTVDELKEINLGTNEEPRPTFISTLLTPEEDTEYLRLLSTYKDIFAWSYKEIP
GLDPKVAVHHLAVKPGSRPIKQTQQ