CuGenDBv2

Gene ID	Sed0005422
Organism	Sechium edule (Chayote v1)
Description	SpoU_methylase domain-containing protein
Genome location	LG02:49546798..49550745
RNA-Seq Expression	Sed0005422
Synteny	Sed0005422
Gene Ontology terms	GO:0001510 - RNA methylation (biological process) GO:0006396 - RNA processing (biological process) GO:0003723 - RNA binding (molecular function) GO:0008173 - RNA methyltransferase activity (molecular function)
InterPro domains	IPR001537 - tRNA/rRNA methyltransferase, SpoU type IPR029026 - tRNA (guanine-N1-)-methyltransferase, N-terminal IPR029028 - Alpha/beta knot methyltransferases

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049420.1 putative TrmH family tRNA/rRNA methyltransferase [Cucumis melo var. makuwa]

2.3e-100

90.2

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Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHNVGT+ARSATAF VSE ILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQ FLKEKDCDICGVEI D AVAVNQHPFKR+TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFFIYIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DGNKFIVAERPV+QVKRNYC ETEESI EERK RRENASKGFFDEGM+DDS+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI +
Subjt:  FIGE

XP_004134172.1 uncharacterized protein LOC101214849 [Cucumis sativus]

3.3e-99

88.73

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Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHNVGT+ARSATAF VSE ILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQ FLKEKDCDICGVEI D AVAVNQHPFKR+TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFF+YIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DG+KFIVAERPV+QVKRNYC ETEESI EERK RRENASKGFFDEGM+D+S+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI +
Subjt:  FIGE

XP_008438758.1 PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Cucumis melo]

3.9e-100

89.71

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Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHNVGT+ARSATAF VSE ILVGRRDFNAFGSHGSTSH+RFRHFHSLLDAQ FLKEKDCDICGVEI D AVAVNQHPFKR+TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFFIYIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DGNKFIVAERPV+QVKRNYC ETEESI EERK RRENASKGFFDEGM+DDS+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI +
Subjt:  FIGE

XP_022138159.1 uncharacterized protein LOC111009398 [Momordica charantia]

5.1e-100

89.71

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Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHN+GTLARSATAF VSE ILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEI + AVAVNQHPF+++TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFFIYIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DGNKFIVAERPVKQVKRNYC ET ESI EERK RRENASKGFFDEGM+DDS+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI E
Subjt:  FIGE

XP_038877345.1 putative TrmH family tRNA/rRNA methyltransferase [Benincasa hispida]

8.8e-100

89.22

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Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHNVGTLARSATAF VSE +LVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQ+FLKEKDCDICGVEI D AVAVNQHPFKR+TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFFIYIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DGNKFIVAERP+KQ KRNYC ETEESI EERK RRENASKGFFDEG++DDS+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI +
Subjt:  FIGE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAH1 SpoU_methylase domain-containing protein

1.6e-99

88.73

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Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHNVGT+ARSATAF VSE ILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQ FLKEKDCDICGVEI D AVAVNQHPFKR+TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFF+YIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DG+KFIVAERPV+QVKRNYC ETEESI EERK RRENASKGFFDEGM+D+S+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI +
Subjt:  FIGE

A0A1S3AXA1 putative TrmH family tRNA/rRNA methyltransferase

1.9e-100

89.71

Show/hide

Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHNVGT+ARSATAF VSE ILVGRRDFNAFGSHGSTSH+RFRHFHSLLDAQ FLKEKDCDICGVEI D AVAVNQHPFKR+TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFFIYIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DGNKFIVAERPV+QVKRNYC ETEESI EERK RRENASKGFFDEGM+DDS+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI +
Subjt:  FIGE

A0A5A7U267 Putative TrmH family tRNA/rRNA methyltransferase

1.1e-100

90.2

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Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHNVGT+ARSATAF VSE ILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQ FLKEKDCDICGVEI D AVAVNQHPFKR+TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFFIYIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DGNKFIVAERPV+QVKRNYC ETEESI EERK RRENASKGFFDEGM+DDS+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI +
Subjt:  FIGE

A0A6J1C999 uncharacterized protein LOC111009398

2.5e-100

89.71

Show/hide

Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHN+GTLARSATAF VSE ILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEI + AVAVNQHPF+++TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFFIYIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DGNKFIVAERPVKQVKRNYC ET ESI EERK RRENASKGFFDEGM+DDS+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI E
Subjt:  FIGE

A0A6J1IDR0 uncharacterized protein LOC111472230 isoform X2

2.7e-99

89.22

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Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI
        RHNVGTLARSATAF VSE ILVGRRDFNAFGSHGSTSH+RFRHFHSLLDA+NFL+EKDCDICGVEI D AVAVNQHPFKR+TAFLLGNEGTGLSAKE AI
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAI

Query:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL
        CDFFIYIPQYGV TASLNVTVAASIVL HFGVWAGF ERC DGNKFIVAERPVKQ KRNYC ETEESI EERK RR+NASKGFFDEG +DDS+SNLLDTL
Subjt:  CDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTL

Query:  FIGE
        FI E
Subjt:  FIGE

SwissProt top hits

e value

%identity

Alignment

Q9JUU8 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB

5.5e-04

29.01

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Query:  HNVGTLARSATAFCVSEFILVGRRD--FNAFGS---HGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAK
        HN+G   R+A A  V   I    +    NA  S    G+   + +    +L      LKE    I G ++  G   +       + A+++GNEG G+   
Subjt:  HNVGTLARSATAFCVSEFILVGRRD--FNAFGS---HGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAK

Query:  ERAICDFFIYIPQYGVSTASLNVTVAASIVL
         R  CD  + IP +G +  S+NV+V+A +VL
Subjt:  ERAICDFFIYIPQYGVSTASLNVTVAASIVL

Q9JZR3 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB

7.2e-04

29.01

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Query:  HNVGTLARSATAFCVSEFILVGRRD--FNAFGSH---GSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAK
        HN+G   R+A A  V   I    +    NA  S    G+   + +    +L      LKE    I G +++ G   +       + A+++GNEG G+   
Subjt:  HNVGTLARSATAFCVSEFILVGRRD--FNAFGSH---GSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAK

Query:  ERAICDFFIYIPQYGVSTASLNVTVAASIVL
         R  CD  + IP +G +  S+NV+V+A +VL
Subjt:  ERAICDFFIYIPQYGVSTASLNVTVAASIVL

Arabidopsis top hits

e value

%identity

Alignment

AT4G15520.1 tRNA/rRNA methyltransferase (SpoU) family protein

6.3e-88

76.33

Show/hide

Query:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLK-EKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERA
        RHNVGTLARSATAF V+E ILVGRRDFNAFGSHGS SH+RFRHFHSL++A+N+LK EKDCDICGVEIADGA AVN+HPFKRNTAFLLGNEG+GLSAKE  
Subjt:  RHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLK-EKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERA

Query:  ICDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDD--SSSNLL
        ICDFF+YIPQYG  TASLNVTVAASIVL HFGVWAGF+ER  DG+KFIVA+RPV+Q +RN+C  TEES+ EERK R+E+A  GFFD+   ++  SSS+LL
Subjt:  ICDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDD--SSSNLL

Query:  DTLFIGE
        D LF+ E
Subjt:  DTLFIGE

AT5G15390.1 tRNA/rRNA methyltransferase (SpoU) family protein

3.9e-05

26.52

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Query:  NVGTLARSATAFCVSEFILVG-----RRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKE
        N+    RSA A  +    +V      R + N   S G+   L    + +  +    LK +   I    +    V++    +   TA ++GNEG G+S + 
Subjt:  NVGTLARSATAFCVSEFILVG-----RRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKE

Query:  RAICDFFIYIPQYGVSTASLNVTVAASIVLQH
          + D    IP  G+   S NV+VAA I++ H
Subjt:  RAICDFFIYIPQYGVSTASLNVTVAASIVLQH

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCATCAGACGGCAGGCCGGAACCGTAAACCGTTCCTTCTCCTACGGCACAACGTCGGCACGTTGGCCCGGAGCGCCACCGCCTTCTGCGTTTCGGAGTTCATCCTCGT
CGGCCGTCGGGACTTCAACGCCTTCGGTAGCCATGGCTCCACCTCTCACCTTCGCTTCCGCCATTTTCATTCCCTTCTCGACGCTCAAAATTTCCTCAAGGAGAAGGATT
GTGACATATGTGGCGTGGAGATCGCTGACGGTGCCGTGGCTGTTAATCAGCATCCTTTCAAGAGGAACACCGCTTTTCTTCTCGGCAACGAGGGAACAGGACTTTCTGCT
AAAGAGCGTGCAATCTGCGACTTCTTCATTTATATCCCACAGTATGGTGTCAGCACTGCTTCTTTGAATGTAACTGTAGCTGCTTCCATTGTCCTACAGCATTTTGGTGT
TTGGGCAGGATTTACTGAAAGGTGTTGTGACGGTAACAAGTTTATAGTAGCCGAAAGACCAGTAAAACAGGTCAAGCGAAATTACTGCCACGAAACAGAAGAATCTATCA
CTGAAGAGCGAAAATGCAGGAGGGAGAATGCTTCAAAAGGTTTCTTTGATGAGGGAATGGTTGATGATTCATCATCCAACCTTCTTGATACATTGTTTATTGGCGAATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MHQTAGRNRKPFLLLRHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSA
KERAICDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTLFIGE

Sed0005422 (gene) of Chayote v1 genome