| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_022158561.1 DNA-directed RNA polymerase V subunit 5A [Momordica charantia] | 5.0e-106 | 87.72 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GFEGEPN VELG CLSSY+D+GSTESH+Y+L RRTVLEMLRDRGY SD DL+LQQFREIY Q+PDVDRLKLSAVH SDP+K+ILVIFCGTGS
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKVN IRNIAGQIVNKDTLHGLILIVQNQIT AMKAV+LFSFKVEIFQITDLLVN+TKHALKPNH +LTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
YGLEKGQVVKVTYDGDMT SHVTYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| XP_022950955.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata] | 8.6e-106 | 86.84 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GF GEPN VELG CLSSY+DDG+TESH+YYLSRRTVLEMLRDRGY INPSDIDL+LQQFREIY Q DVDRLKLSA H +DP+K+ILVIFCGTG+
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKV+ IRNIAGQIVNK+TLHGLILIVQNQIT AMKAVE+FSFKVEIFQITDLLVN+TKHALKPNH +LTEEEKQKLL+QYSIEEKQLPRMLRTDAIARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
YGLEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| XP_022971518.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita maxima] | 5.0e-106 | 86.84 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GF GEPN VELG CLSSY+DDG+TESH+YYLSRRTVLEMLRDRGY INPSDIDL+LQQFREIY Q PDVDRLKLSA H +DP+K+ILVIFCGTG+
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKV+ IRNIAGQIVNK+TLHGLILIVQNQIT AMKAVE+FSFKVEIFQITDLLVN+TKHALKPNH +LTEEEKQKLL+QYSIEEKQLPRMLRTDAIARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
Y LEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| XP_023539155.1 DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo] | 4.6e-107 | 87.28 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GF GEPN VELG CLSSY+DDG+TESH+YYLSRRTVLEMLRDRGY INPSDIDL+LQQFREIY Q PDVDRLKLSA H +DP+K+ILVIFCGTG+
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKV+ IRNIAGQIVNK+TLHGLILIVQNQIT AMKAVE+FSFKVEIFQITDLLVN+TKHALKPNH +LTEEEKQKLL+QYSIEEKQLPRMLRTDAIARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
YGLEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| XP_038903402.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] | 6.6e-106 | 85.96 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GFEGEPN VE G CLSSY+D+G+TESH+Y+LSRRTVLEMLRDRGY +N SDIDLSLQQFREIY Q+PDVDRLKLSAVH SDP+K++LVIFCGTG+
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKVN IRNIAGQI NKD+LHGLILIVQNQIT AMKAVELFSFKVEIFQITDLLVN+TKHALKPNH +L+EEEKQKLL+QYSIEEKQLPRMLR DA+ARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
YGLEKGQVVKVTYDGDMTRSHVTYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LCG9 Uncharacterized protein | 2.5e-103 | 83.33 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GFE EPN VE G CLSSY+DDG+TESH+Y+LSRRTV+EML+DRGY IN +ID SLQQFRE + Q PDVDRLKLSA H SDP+K++LV+FCGTG+
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKVN IRNIAGQI NKD+LHGLILIVQNQIT AMKAVELFSFKVEIFQITDLLVN+TKHALKPNH +LTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
YGLEKGQVVKVTYDGDMTR+H+TYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| A0A1S3B7M5 DNA-directed RNA polymerase V subunit 5A | 2.5e-103 | 83.77 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GFE EPN VE G CLSSY+DDG+TESH+Y+LSRRTV+EML+DRGY IN DIDLSLQQFR+I+ Q PDVDRLKL A H SDP+K++LV+FCGTG+
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKVN IRNIAGQI NKD+LHGLILIVQNQIT AMKAVELFSFKVEIFQITDLLVN+TKHALKPNH +LTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
YGLEKGQVVKVTYDGDMT +HVTYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| A0A6J1E191 DNA-directed RNA polymerase V subunit 5A | 2.4e-106 | 87.72 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GFEGEPN VELG CLSSY+D+GSTESH+Y+L RRTVLEMLRDRGY SD DL+LQQFREIY Q+PDVDRLKLSAVH SDP+K+ILVIFCGTGS
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKVN IRNIAGQIVNKDTLHGLILIVQNQIT AMKAV+LFSFKVEIFQITDLLVN+TKHALKPNH +LTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
YGLEKGQVVKVTYDGDMT SHVTYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| A0A6J1GH86 DNA-directed RNA polymerase V subunit 5A isoform X2 | 4.2e-106 | 86.84 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GF GEPN VELG CLSSY+DDG+TESH+YYLSRRTVLEMLRDRGY INPSDIDL+LQQFREIY Q DVDRLKLSA H +DP+K+ILVIFCGTG+
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKV+ IRNIAGQIVNK+TLHGLILIVQNQIT AMKAVE+FSFKVEIFQITDLLVN+TKHALKPNH +LTEEEKQKLL+QYSIEEKQLPRMLRTDAIARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
YGLEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| A0A6J1I733 DNA-directed RNA polymerase V subunit 5A isoform X2 | 2.4e-106 | 86.84 | Show/hide |
Query: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
EED GF GEPN VELG CLSSY+DDG+TESH+YYLSRRTVLEMLRDRGY INPSDIDL+LQQFREIY Q PDVDRLKLSA H +DP+K+ILVIFCGTG+
Subjt: EEDGYGFEGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGS
Query: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
VKV+ IRNIAGQIVNK+TLHGLILIVQNQIT AMKAVE+FSFKVEIFQITDLLVN+TKHALKPNH +LTEEEKQKLL+QYSIEEKQLPRMLRTDAIARY
Subjt: VKVNTIRNIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARY
Query: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
Y LEKGQ+VKVTYDGDMTRSHVTYRCVW
Subjt: YGLEKGQVVKVTYDGDMTRSHVTYRCVW
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 8.8e-29 | 32.54 | Show/hide |
Query: DGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDR-----LKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDTLH
D E+++ + R+TVL+M+ DRGY + ++D L+ F+E + P + L + H+ DPA ++ V F + + TI+ I Q + + +
Subjt: DGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDR-----LKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDTLH
Query: GLILIVQNQITTPAMKAVELFS--FKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
I++VQ +T A +++ + + +E F +L+VN+T+H L P H+++T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ +
Subjt: GLILIVQNQITTPAMKAVELFS--FKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCV
++TYR V
Subjt: RSHVTYRCV
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| Q9M1H8 DNA-directed RNA polymerase V subunit 5C | 4.5e-49 | 44.98 | Show/hide |
Query: CLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDT
C+S D G ES ++YL+R T EMLRDRGY +N +++ L+L +FR ++ + P+++RL++ SDP KKILV+F GT + V ++R + QI N
Subjt: CLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDT
Query: LHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
LH +IL++Q+++ A KA+ F F VE F I DLLVN+TKH +P +L +EEK++LL+++++E+KQLP + D+ RYYGL+K QVVK+TY +
Subjt: LHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCV
VTYRC+
Subjt: RSHVTYRCV
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| Q9M1J2 DNA-directed RNA polymerase V subunit 5A | 1.1e-74 | 62.86 | Show/hide |
Query: CLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDT
CLS YVD S ESH+YYL+RR L+MLRDRGY ++ DI+LSL FR +Y + PDVDRL++SA+H SD KK+ ++F GT VKVN IR++ I++++T
Subjt: CLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDT
Query: LHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +T A+KA+ELFSFKVEIFQITDLLVN+TKH+LKP H +L +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCVW
SHV +RCVW
Subjt: RSHVTYRCVW
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| Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 2.0e-28 | 32.54 | Show/hide |
Query: DGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDR-----LKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDTLH
D E+++ + R+TVL+M+ DRGY + ++D L+ F+ Y P + L + H+ DPA ++ V F + + TI+ I Q + + +
Subjt: DGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDR-----LKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDTLH
Query: GLILIVQNQITTPAMKAVELFS--FKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
I++VQ +T A +++ + + +E F +L+VN+T+H L P H+++T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ +
Subjt: GLILIVQNQITTPAMKAVELFS--FKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCV
++TYR V
Subjt: RSHVTYRCV
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| Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B | 1.9e-68 | 58.18 | Show/hide |
Query: EGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIR
EG+ + +G +S S E HKYYL+RRT +EMLRDRGY+++ DI+LSLQQFR +Y + PDVD L++SA H D +KKI V+FCGTG VKVN +R
Subjt: EGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIR
Query: NIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
IA +++++ + GLIL++Q+ IT A+KAVELFSFKVE+F+ITDLLVNV+KH L+P H +L ++EK+ LLK++SIEEKQLPR+ D I RYYGLE GQ
Subjt: NIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
Query: VVKVTYDGDMTRSHVTYRCV
V+KVTY +++ SHVTYRCV
Subjt: VVKVTYDGDMTRSHVTYRCV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 1.4e-69 | 58.18 | Show/hide |
Query: EGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIR
EG+ + +G +S S E HKYYL+RRT +EMLRDRGY+++ DI+LSLQQFR +Y + PDVD L++SA H D +KKI V+FCGTG VKVN +R
Subjt: EGEPNGVELGACLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIR
Query: NIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
IA +++++ + GLIL++Q+ IT A+KAVELFSFKVE+F+ITDLLVNV+KH L+P H +L ++EK+ LLK++SIEEKQLPR+ D I RYYGLE GQ
Subjt: NIAGQIVNKDTLHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQ
Query: VVKVTYDGDMTRSHVTYRCV
V+KVTY +++ SHVTYRCV
Subjt: VVKVTYDGDMTRSHVTYRCV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 2.6e-28 | 35 | Show/hide |
Query: ESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDTLHGLILIVQNQ
E + Y ++T+++MLRDRGY I S++ ++ QQF + + L +D + ++ + F V V T++ ++ +++ IL+VQ
Subjt: ESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDTLHGLILIVQNQ
Query: ITTPAMKAVELFS--FKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
+T A + S F +E+FQ ++LVN+ +H L P H +LT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITTPAMKAVELFS--FKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 3.2e-50 | 44.98 | Show/hide |
Query: CLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDT
C+S D G ES ++YL+R T EMLRDRGY +N +++ L+L +FR ++ + P+++RL++ SDP KKILV+F GT + V ++R + QI N
Subjt: CLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDT
Query: LHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
LH +IL++Q+++ A KA+ F F VE F I DLLVN+TKH +P +L +EEK++LL+++++E+KQLP + D+ RYYGL+K QVVK+TY +
Subjt: LHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCV
VTYRC+
Subjt: RSHVTYRCV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 7.6e-76 | 62.86 | Show/hide |
Query: CLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDT
CLS YVD S ESH+YYL+RR L+MLRDRGY ++ DI+LSL FR +Y + PDVDRL++SA+H SD KK+ ++F GT VKVN IR++ I++++T
Subjt: CLSSYVDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQTPDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDT
Query: LHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +T A+KA+ELFSFKVEIFQITDLLVN+TKH+LKP H +L +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITTPAMKAVELFSFKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYRCVW
SHV +RCVW
Subjt: RSHVTYRCVW
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 3.1e-29 | 36.23 | Show/hide |
Query: VDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQT---PDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDTLH
+ D E + + RRTVL+MLRDRGY I SD++L ++F + + +T + + L +SA +PA KI V + V V I+ + D +H
Subjt: VDDGSTESHKYYLSRRTVLEMLRDRGYNINPSDIDLSLQQFREIYSQT---PDVDRLKLSAVHSSDPAKKILVIFCGTGSVKVNTIRNIAGQIVNKDTLH
Query: GLILIVQNQITTPAMKAVELFS--FKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
I++V IT PA AV + +E+F+ +L+ N+T+H L + +L ++ K+KLL Y++++ QLPR+L TD +ARYYGL++GQVVK+ +
Subjt: GLILIVQNQITTPAMKAVELFS--FKVEIFQITDLLVNVTKHALKPNHLMLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RSHVTYR
+ TYR
Subjt: RSHVTYR
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