| GenBank top hits | e value | %identity | Alignment |
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| KAG6591223.1 Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. sororia] | 8.2e-58 | 91.67 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDA+IKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
VGRGRAVAMRAKAQAAGRG A PSARR
Subjt: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
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| XP_022151728.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] | 2.8e-58 | 92.42 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDA+IKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRGSAA-----PSARR
VGRGRAVAMRAKAQAAGRGSA PSARR
Subjt: VGRGRAVAMRAKAQAAGRGSAA-----PSARR
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| XP_022940723.1 small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] | 3.7e-58 | 92.42 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDAKIKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
VGRGRAVAMRAKAQAAGRG A PSARR
Subjt: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
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| XP_023522400.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo] | 8.2e-58 | 91.67 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDA+IKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRGSA-----APSARR
VGRGRAVAMRAKAQAAGRG A PSARR
Subjt: VGRGRAVAMRAKAQAAGRGSA-----APSARR
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| XP_038896140.1 small nuclear ribonucleoprotein SmD3a-like [Benincasa hispida] | 2.8e-58 | 92.42 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDA+IKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRGS-----AAPSARR
VGRGRAVAMRAKAQAAGRGS AAPS RR
Subjt: VGRGRAVAMRAKAQAAGRGS-----AAPSARR
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A6J1DDX8 Small nuclear ribonucleoprotein Sm D3 | 1.4e-58 | 92.42 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDA+IKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRGSAA-----PSARR
VGRGRAVAMRAKAQAAGRGSA PSARR
Subjt: VGRGRAVAMRAKAQAAGRGSAA-----PSARR
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| A0A6J1F9D0 Small nuclear ribonucleoprotein Sm D3 | 4.0e-58 | 91.67 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDA+IKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
VGRGRAVAMRAKAQAAGRG A PSARR
Subjt: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
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| A0A6J1FQ35 Small nuclear ribonucleoprotein Sm D3 | 1.8e-58 | 92.42 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDAKIKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
VGRGRAVAMRAKAQAAGRG A PSARR
Subjt: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
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| A0A6J1IBE9 Small nuclear ribonucleoprotein Sm D3 | 4.0e-58 | 91.67 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDA+IKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
VGRGRAVAMRAKAQAAGRG A PSARR
Subjt: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
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| A0A6J1IVB4 Small nuclear ribonucleoprotein Sm D3 | 1.8e-58 | 92.42 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEAAGH+VSVELKSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGSKVRFMV+PDMLKNAPMFKRLDAKIKGKGASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
VGRGRAVAMRAKAQAAGRG A PSARR
Subjt: VGRGRAVAMRAKAQAAGRG-----SAAPSARR
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P62318 Small nuclear ribonucleoprotein Sm D3 | 4.3e-33 | 57.76 | Show/hide |
Query: SLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLGVGR
S+G+P+K+LHEA GHIV+ E +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + K +G GA GR
Subjt: SLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLGVGR
Query: GRAVAMRAKAQAAGRG
G+A ++A+ A GRG
Subjt: GRAVAMRAKAQAAGRG
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| P62320 Small nuclear ribonucleoprotein Sm D3 | 4.3e-33 | 57.76 | Show/hide |
Query: SLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLGVGR
S+G+P+K+LHEA GHIV+ E +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + K +G GA GR
Subjt: SLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLGVGR
Query: GRAVAMRAKAQAAGRG
G+A ++A+ A GRG
Subjt: GRAVAMRAKAQAAGRG
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| P62323 Small nuclear ribonucleoprotein Sm D3 | 4.3e-33 | 57.76 | Show/hide |
Query: SLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLGVGR
S+G+P+K+LHEA GHIV+ E +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + K +G GA GR
Subjt: SLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLGVGR
Query: GRAVAMRAKAQAAGRG
G+A ++A+ A GRG
Subjt: GRAVAMRAKAQAAGRG
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| Q9LM92 Small nuclear ribonucleoprotein SmD3b | 1.0e-50 | 81.06 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEA+GHIV+VELKSGELYRGSMIECEDNWNCQLE+IT+TAKDGKVSQLEHVFIRGSKVRFMV+PD+LK+APMFKRLDA+IKGK +SLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAK-AQAAGRGS----AAPSARR
VGRGR AMR K A GRG+ A P RR
Subjt: VGRGRAVAMRAK-AQAAGRGS----AAPSARR
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| Q9S7E6 Small nuclear ribonucleoprotein SmD3a | 1.9e-49 | 79.23 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHE++GHIVSVE+KSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGS VRF+V+PDMLKNAPMFK D + KGK ASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRG---SAAPSARR
VGRGR AMRAK G G A P RR
Subjt: VGRGRAVAMRAKAQAAGRG---SAAPSARR
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G20580.1 Small nuclear ribonucleoprotein family protein | 7.2e-52 | 81.06 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHEA+GHIV+VELKSGELYRGSMIECEDNWNCQLE+IT+TAKDGKVSQLEHVFIRGSKVRFMV+PD+LK+APMFKRLDA+IKGK +SLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAK-AQAAGRGS----AAPSARR
VGRGR AMR K A GRG+ A P RR
Subjt: VGRGRAVAMRAK-AQAAGRGS----AAPSARR
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| AT1G76300.1 snRNP core protein SMD3 | 1.4e-50 | 79.23 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
MSRSLGIPVKLLHE++GHIVSVE+KSGELYRGSMIECEDNWNCQLENIT+TAKDGKVSQLEHVFIRGS VRF+V+PDMLKNAPMFK D + KGK ASLG
Subjt: MSRSLGIPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG
Query: VGRGRAVAMRAKAQAAGRG---SAAPSARR
VGRGR AMRAK G G A P RR
Subjt: VGRGRAVAMRAKAQAAGRG---SAAPSARR
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| AT3G07590.1 Small nuclear ribonucleoprotein family protein | 7.0e-07 | 28.32 | Show/hide |
Query: VKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKG--ASLGVGRGRA
V+ L + VS+ELK+G + G++ + + N L+ + + K L+H+ +RG+ +R+ ++PD L + ++K K A VGRGR
Subjt: VKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKG--ASLGVGRGRA
Query: VAMRAKAQAAGRG
R + + GRG
Subjt: VAMRAKAQAAGRG
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| AT4G02840.1 Small nuclear ribonucleoprotein family protein | 3.2e-07 | 28.95 | Show/hide |
Query: VKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG---VGRGR
V+ L + VS+ELK+G + G++ + + N L+ + T K L+H+ +RG+ +R+ ++PD L + +IK K + G GRGR
Subjt: VKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLG---VGRGR
Query: AVAMRAKAQAAGRG
R + + GRG
Subjt: AVAMRAKAQAAGRG
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| AT5G27720.1 Small nuclear ribonucleoprotein family protein | 6.8e-10 | 33.62 | Show/hide |
Query: IPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLGVGRGR
+P+ LL A GH + VELK+GE Y G ++ C+ N L + T+KDG + ++ +IRG+ ++++ VPD + + ++ K G +G GRGR
Subjt: IPVKLLHEAAGHIVSVELKSGELYRGSMIECEDNWNCQLENITFTAKDG-KVSQLEHVFIRGSKVRFMVVPDMLKNAPMFKRLDAKIKGKGASLGVGRGR
Query: AVAMRAKAQAAGRGSA
V A+ GRG++
Subjt: AVAMRAKAQAAGRGSA
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