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Sed0005547 (gene) of Chayote v1 genome

Gene IDSed0005547
OrganismSechium edule (Chayote v1)
DescriptionReplication protein A 14 kDa subunit B-like
Genome locationLG07:37653591..37657359
RNA-Seq ExpressionSed0005547
SyntenySed0005547
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601223.1 Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]2.1e-4790.65Show/hide
Query:  DMDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANG
        DMDTSNPAVF NGELL+MH GRKIRAVVQVIQSDGG+VTGKSTD Q LTV GLP+VPLM+FVEVVGIAEGNKIINVEHWTDFGNTFD QSYNQLCQLANG
Subjt:  DMDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANG

Query:  EFRSLFL
        EFRSLFL
Subjt:  EFRSLFL

XP_008446755.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo]9.7e-4585.85Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GRKIRAVVQVIQSDGG+VTGKSTD Q LT+ GLP+VP M+FVEVVGIA+ NK INVEHWTDFG TFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

XP_022988152.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]1.7e-4487.74Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTD Q LTV GLP+VPLM+FVEVVGIAEGNKIINVEHWTDFG  FD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLFL
Subjt:  FRSLFL

XP_023539791.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]2.6e-4587.74Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVF NGELL++H GRKIRAVVQVIQSDGG+VTGKSTD Q LTV GLP+VPLM+FVEVVGIAEGNKIINVEHWTDFG TFD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

XP_038893019.1 replication protein A 14 kDa subunit B-like [Benincasa hispida]6.1e-4789.62Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GRKIRAVVQVIQSDGG+VTGKSTD Q LT++GLP+VPLM+FVEVVGIAE NKIINVEHWTDFG TFDTQSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

TrEMBL top hitse value%identityAlignment
A0A0A0KRF2 Uncharacterized protein2.6e-4384.91Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GRKIRAVVQVIQSDGG+VTGKSTD Q LT+ GLP+VP M+FVEVVGIAE NK I VE WTDFG TFDT SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

A0A1S3BGM8 replication protein A 14 kDa subunit B-like4.7e-4585.85Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GRKIRAVVQVIQSDGG+VTGKSTD Q LT+ GLP+VP M+FVEVVGIA+ NK INVEHWTDFG TFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

A0A5A7SU42 Replication protein A 14 kDa subunit B-like4.7e-4585.85Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVNGELLSMH GRKIRAVVQVIQSDGG+VTGKSTD Q LT+ GLP+VP M+FVEVVGIA+ NK INVEHWTDFG TFDT+SYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLF+
Subjt:  FRSLFL

A0A6J1D9X1 replication protein A 14 kDa subunit B-like9.8e-4383.02Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVFVN ELL +HIGRKIRAV QV +SDGG+VTGKSTD Q+LTV GLP VPLM+FVEV+GIAE NKIINVEH TDFGNTFD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        F+S+FL
Subjt:  FRSLFL

A0A6J1JC99 replication protein A 14 kDa subunit B-like8.0e-4587.74Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTSNPAVF NGELL+MH GRKIRAVVQVIQSD G+VTGKSTD Q LTV GLP+VPLM+FVEVVGIAEGNKIINVEHWTDFG  FD QSYNQLCQLANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FRSLFL
Subjt:  FRSLFL

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B4.4e-3260.38Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTS+PA FVNG LL  +IG+K+RAV+QVI+SD G V GKSTD Q + V+G P  PL +++EV+GIAE +  I  E WT+FG++FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FR LF+
Subjt:  FRSLFL

Q9LXK1 Replication protein A 14 kDa subunit A7.8e-2957.01Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQG-LPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANG
        MDTS+P+ FVNG LL   IG+K+R V+QV  S+ G V GKSTD   + V+G  P  PL +++EV+GIAE +  I  E WT+FGNTFDTQ+YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQG-LPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANG

Query:  EFRSLFL
        EF+ LF+
Subjt:  EFRSLFL

Q9SDK9 Replication protein A 14 kDa subunit6.6e-2852.83Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTS PA FVNGE+L M +GR++R VVQ  + +GGL+ G+STDG  LT++G    P+  +VE++GIAE N+ I  E  TDFG  FD   +N LC+LANG+
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
         + LFL
Subjt:  FRSLFL

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein5.5e-3057.01Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQG-LPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANG
        MDTS+P+ FVNG LL   IG+K+R V+QV  S+ G V GKSTD   + V+G  P  PL +++EV+GIAE +  I  E WT+FGNTFDTQ+YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQG-LPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANG

Query:  EFRSLFL
        EF+ LF+
Subjt:  EFRSLFL

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein5.5e-3057.01Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQG-LPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANG
        MDTS+P+ FVNG LL   IG+K+R V+QV  S+ G V GKSTD   + V+G  P  PL +++EV+GIAE +  I  E WT+FGNTFDTQ+YN+LC+LANG
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQG-LPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANG

Query:  EFRSLFL
        EF+ LF+
Subjt:  EFRSLFL

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein3.1e-3360.38Show/hide
Query:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE
        MDTS+PA FVNG LL  +IG+K+RAV+QVI+SD G V GKSTD Q + V+G P  PL +++EV+GIAE +  I  E WT+FG++FD Q+YN+LC+LANGE
Subjt:  MDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLANGE

Query:  FRSLFL
        FR LF+
Subjt:  FRSLFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTACTCCATAATCGTGGATTTCATGATCCTTGATATGGATACTTCGAACCCTGCAGTTTTTGTCAATGGCGAGCTATTGAGCATGCATATTGGAAGAAAAATTCG
AGCAGTTGTTCAAGTTATCCAAAGTGATGGCGGGTTGGTCACAGGAAAATCTACGGATGGACAAGATTTGACCGTTCAGGGCTTGCCCTCAGTGCCTCTCATGAGCTTTG
TAGAGGTGGTTGGCATTGCTGAGGGCAACAAGATCATCAATGTTGAACATTGGACCGACTTTGGAAACACATTTGATACCCAATCTTACAATCAGCTGTGCCAACTTGCA
AATGGTGAATTCAGAAGTTTATTTCTCTAA
mRNA sequenceShow/hide mRNA sequence
GCCATAAATTCCCGCCTGCTCTTAGTTCATCGCTTGAAACCCTCATTCTCGCCACGAACTCTCTGCATCGTGCGCGGAAGATTTACGGTCTCATCCGCTTATTTAGAAGC
AGGAATTTCATCGTACGAAAGGTAGTTTGTTTGATGATTTACTCCATAATCGTGGATTTCATGATCCTTGATATGGATACTTCGAACCCTGCAGTTTTTGTCAATGGCGA
GCTATTGAGCATGCATATTGGAAGAAAAATTCGAGCAGTTGTTCAAGTTATCCAAAGTGATGGCGGGTTGGTCACAGGAAAATCTACGGATGGACAAGATTTGACCGTTC
AGGGCTTGCCCTCAGTGCCTCTCATGAGCTTTGTAGAGGTGGTTGGCATTGCTGAGGGCAACAAGATCATCAATGTTGAACATTGGACCGACTTTGGAAACACATTTGAT
ACCCAATCTTACAATCAGCTGTGCCAACTTGCAAATGGTGAATTCAGAAGTTTATTTCTCTAAGGAGCTGTGGCAATGCAATGAAAAGAGGTAGAGATATTAATTTATTT
CTGTGATTTTGAATCTTTTATGCTTGAAGTGTAACTTATGTGGCTGTGTTTACTTTTTTAACTGATGTGAATCTATTTAAAGCAACCATGATGTTTGATTTGGTTATTGT
GTGAGCCACAATTATGCACATTGTTTTTATTTTGATGTACAAGCTGGGAATGAAGTTCAGAATCTTCTATGCTTGTAACTTTGTAAGGTACCTGATGAGTCACTTTTTTC
ACTTCCATTTCATTTGAATTTAAACGGCTGAATATGTCGAAAATGTAAT
Protein sequenceShow/hide protein sequence
MIYSIIVDFMILDMDTSNPAVFVNGELLSMHIGRKIRAVVQVIQSDGGLVTGKSTDGQDLTVQGLPSVPLMSFVEVVGIAEGNKIINVEHWTDFGNTFDTQSYNQLCQLA
NGEFRSLFL