CuGenDBv2

Gene ID	Sed0005563
Organism	Sechium edule (Chayote v1)
Description	Retrotransposon protein
Genome location	LG01:13951918..13952672
RNA-Seq Expression	Sed0005563
Synteny	Sed0005563
Gene Ontology terms	NA
InterPro domains	IPR024752 - Myb/SANT-like domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-49

44.89

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Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I  E  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   + +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

KAA0033744.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-49

44.89

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Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I  E  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   + +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-49

44.89

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Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I  E  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   + +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]

1.3e-50

45.78

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Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R +RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I VE  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   I +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]

5.1e-50

45.33

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Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEE---DSNAEVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I  E  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+      D       G G++++   Y   + +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEE---DSNAEVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TC56 Retrotransposon protein

5.4e-50

44.89

Show/hide

Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I  E  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   + +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

A0A5A7TGP1 Retrotransposon protein

6.4e-51

45.78

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Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R +RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I VE  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   I +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

A0A5A7TRV1 Retrotransposon protein

5.4e-50

44.89

Show/hide

Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I  E  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   + +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

A0A5A7U308 Retrotransposon protein

2.4e-50

45.33

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Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEE---DSNAEVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I  E  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+      D       G G++++   Y   + +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEE---DSNAEVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

A0A5D3DCZ1 Retrotransposon protein

5.4e-50

44.89

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Query:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        M+ + R  RH WT  ++ TLV+ L+ELV  GGW+SDNGTFR  Y  +L+R+M  KLPGC + +TTVID R+K+ KR +QAIAEM G  CSGFGWND+ KC
Subjt:  MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS
        I  E  +FDNWV++HP AKGL NKPFP+YD+L Y+FG+DRA G  +++  D+   +          G G++++   Y   + +++++   +  SR +   
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNA---EVGEGGGSQEY---YIPEIPVAEEEDPNTPTSRVARPS

Query:  SSSVGEKRKRVSEKQEMLDVLRLGM
        + S G KRKR S++   L+ + L +
Subjt:  SSSVGEKRKRVSEKQEMLDVLRLGM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

4.6e-09

24.87

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Query:  WTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNW
        WT   D  L+  L+E V  G       TF     NE++   + K       +  V+  R K  +R Y  I  +L    +GF W+ +   +  +  +++ +
Subjt:  WTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNW

Query:  VQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAE---VGEGGGSQEY----YIPEIPVAEEEDPNTPTSRVARP
        +Q HP A+    K  P Y +L +IFGK+ + G  ++ A+  A + S AE   + E G +  +       ++     E  + P S +  P
Subjt:  VQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAE---VGEGGGSQEY----YIPEIPVAEEEDPNTPTSRVARP

AT4G02210.1 unknown protein

8.7e-08

21.08

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Query:  IRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITS-------TTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        +R  WT   D   ++ ++E V++G          N++ + L      K   C  T+         V+  R K+ +  ++++  +L     GF W+D  + 
Subjt:  IRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITS-------TTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEGGG
        +  +  V+D +++ HP+++    K  P Y DL  ++       S  ++   I+E +S   + E  G
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEGGG

AT4G02210.2 unknown protein

8.7e-08

21.08

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Query:  IRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITS-------TTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC
        +R  WT   D   ++ ++E V++G          N++ + L      K   C  T+         V+  R K+ +  ++++  +L     GF W+D  + 
Subjt:  IRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITS-------TTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKC

Query:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEGGG
        +  +  V+D +++ HP+++    K  P Y DL  ++       S  ++   I+E +S   + E  G
Subjt:  IEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEGGG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCGCGACGGTGAGAAACATTCGACACAGTTGGACAGCAATGAAAGATAGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAAGGGGGGTGGAGATCAGATAA
TGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGACTAATGCACCTAAAGCTACCGGGATGCCCAATTACATCTACCACTGTGATTGATACTAGAGTGAAGAGTC
GGAAACGACAGTACCAAGCTATTGCCGAGATGCTGGGAAATACTTGTAGTGGATTCGGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTTGACAAC
TGGGTTCAGACGCACCCAAATGCAAAGGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCGATATCTCA
GTCTGCTAGAGATATTGCAGAAGAAGATTCAAATGCAGAGGTCGGTGAGGGGGGCGGTTCTCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAGACCCAA
ATACCCCCACAAGTAGAGTAGCTAGACCGTCATCCTCTTCTGTGGGAGAGAAGAGAAAAAGGGTCTCGGAAAAGCAGGAAATGCTTGATGTGTTGCGTCTTGGCATGAAA
CATGCGAAGACGAGCAAATTGTGA

mRNA sequence

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Protein sequence

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MAATVRNIRHSWTAMKDSTLVQSLIELVQEGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKSRKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDN
WVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEGGGSQEYYIPEIPVAEEEDPNTPTSRVARPSSSSVGEKRKRVSEKQEMLDVLRLGMK
HAKTSKL

Sed0005563 (gene) of Chayote v1 genome