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Sed0005607 (gene) of Chayote v1 genome

Gene IDSed0005607
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG11:8976987..8978001
RNA-Seq ExpressionSed0005607
SyntenySed0005607
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2711776.1 hypothetical protein I3760_04G092800 [Carya illinoinensis]4.1e-0739.77Show/hide
Query:  NDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGNASRTKFYEYGDWLRAPFVN
        N   +W G  +RVRV++N+S  + R   M+  E V       YE+LP+ CF C   GH  KEC   D N   ++   YG WLRA F+N
Subjt:  NDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGNASRTKFYEYGDWLRAPFVN

MBA0561254.1 hypothetical protein [Gossypium lobatum]2.4e-0735.23Show/hide
Query:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDG-NASRTKFYEYGDWLRA
        +D  D N     ++R++V +N+S L++R V ++    V ++C   +E+LP FC+ C   GH T++C K++G + S     +YG+WLRA
Subjt:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDG-NASRTKFYEYGDWLRA

MBA0740671.1 hypothetical protein [Gossypium gossypioides]3.1e-0737.93Show/hide
Query:  NDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGN--ASRTKFYEYGDWLRAP
        N    WT   IR+R+I+++  L++R V  ++ + V ++    YE LP FC+ CS  GH T++C K++ N   + T+F +YG+WLR P
Subjt:  NDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGN--ASRTKFYEYGDWLRAP

MBA0876216.1 hypothetical protein [Gossypium schwendimanii]2.4e-0735.23Show/hide
Query:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDG-NASRTKFYEYGDWLRA
        +D  D N     ++R++V +N+S L++R V ++    V ++C   +E+LP FC+ C   GH T++C K++G + S     +YG+WLRA
Subjt:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDG-NASRTKFYEYGDWLRA

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.6e-1133.58Show/hide
Query:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGNASRTKFYEYGDWLRAPFVNKFSQKMNDD
        ++ + ++ W GP IRVRV +++S  ++RG+ + +++   I CP  YEKLP+FC+EC   GH  +EC +     +     +YGDWLRA  + K      ++
Subjt:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGNASRTKFYEYGDWLRAPFVNKFSQKMNDD

Query:  GADGFDGSPKKEWSNNKGGRGNRWGSRIRSDKERWRE
            + G          GGRG R   R R   E WR+
Subjt:  GADGFDGSPKKEWSNNKGGRGNRWGSRIRSDKERWRE

TrEMBL top hitse value%identityAlignment
A0A6J1D765 uncharacterized protein LOC1110179027.8e-1233.58Show/hide
Query:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGNASRTKFYEYGDWLRAPFVNKFSQKMNDD
        ++ + ++ W GP IRVRV +++S  ++RG+ + +++   I CP  YEKLP+FC+EC   GH  +EC +     +     +YGDWLRA  + K      ++
Subjt:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGNASRTKFYEYGDWLRAPFVNKFSQKMNDD

Query:  GADGFDGSPKKEWSNNKGGRGNRWGSRIRSDKERWRE
            + G          GGRG R   R R   E WR+
Subjt:  GADGFDGSPKKEWSNNKGGRGNRWGSRIRSDKERWRE

A0A7J8M998 CCHC-type domain-containing protein1.2e-0735.23Show/hide
Query:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDG-NASRTKFYEYGDWLRA
        +D  D N     ++R++V +N+S L++R V ++    V ++C   +E+LP FC+ C   GH T++C K++G + S     +YG+WLRA
Subjt:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDG-NASRTKFYEYGDWLRA

A0A7J9BWU8 zf-CCHC_4 domain-containing protein1.5e-0737.93Show/hide
Query:  NDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGN--ASRTKFYEYGDWLRAP
        N    WT   IR+R+I+++  L++R V  ++ + V ++    YE LP FC+ CS  GH T++C K++ N   + T+F +YG+WLR P
Subjt:  NDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGN--ASRTKFYEYGDWLRAP

A0A7J9I837 CCHC-type domain-containing protein4.4e-0735.23Show/hide
Query:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKEC-YKEDGNASRTKFYEYGDWLRA
        +D  D N     ++R++V +N+S L++R V ++    V ++C   +E+LP FC+ C   GH T++C  KE+ + S     +YG+WLRA
Subjt:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKEC-YKEDGNASRTKFYEYGDWLRA

A0A7J9MZI4 CCHC-type domain-containing protein1.2e-0735.23Show/hide
Query:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDG-NASRTKFYEYGDWLRA
        +D  D N     ++R++V +N+S L++R V ++    V ++C   +E+LP FC+ C   GH T++C K++G + S     +YG+WLRA
Subjt:  MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDG-NASRTKFYEYGDWLRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCGTAATGATTCAAATGATTGGACAGGTCCTATAATTCGTGTTCGAGTGATTTTAAATCTATCTTGCCTTATTCAAAGAGGAGTTAGTATGCTTTCAACTGAGGA
AGTTGTTATTATATGCCCTCAGATGTACGAAAAACTACCAAATTTTTGCTTTGAATGCAGTTCTTTTGGTCATTTGACGAAGGAATGTTATAAAGAAGATGGAAATGCAT
CTAGAACAAAATTTTACGAGTATGGTGATTGGCTAAGAGCTCCGTTTGTGAATAAATTTAGTCAAAAAATGAATGATGATGGGGCTGATGGATTTGATGGTAGTCCAAAG
AAAGAATGGTCGAATAATAAAGGGGGTCGTGGTAATCGATGGGGCTCGAGGATTCGTAGTGATAAAGAAAGATGGAGAGAAAACCCAAAGGAAAATGAGGATTATCTCAA
GAAGGGTGATACTAGTGTAAGCAAAGGGAGCCTTATGATTTATGAGAAGAAGAAAGGAAAATTGAAGTGTAGAGAATGCGGAGAATATAGTGTTGAAAGCGACGTTGAGA
CAGAGAATGCTTTGAATTTTATGACCAACAAGTGGCTGGTGATCAGCTCCACTGCTCGCCATGAAAACCATTTGTTGGAACGTCCGTGGAGTGAACAATTCACGGGCATT
CGTGGACCTTCTGAAGGTTGTTCGCCTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCGTAATGATTCAAATGATTGGACAGGTCCTATAATTCGTGTTCGAGTGATTTTAAATCTATCTTGCCTTATTCAAAGAGGAGTTAGTATGCTTTCAACTGAGGA
AGTTGTTATTATATGCCCTCAGATGTACGAAAAACTACCAAATTTTTGCTTTGAATGCAGTTCTTTTGGTCATTTGACGAAGGAATGTTATAAAGAAGATGGAAATGCAT
CTAGAACAAAATTTTACGAGTATGGTGATTGGCTAAGAGCTCCGTTTGTGAATAAATTTAGTCAAAAAATGAATGATGATGGGGCTGATGGATTTGATGGTAGTCCAAAG
AAAGAATGGTCGAATAATAAAGGGGGTCGTGGTAATCGATGGGGCTCGAGGATTCGTAGTGATAAAGAAAGATGGAGAGAAAACCCAAAGGAAAATGAGGATTATCTCAA
GAAGGGTGATACTAGTGTAAGCAAAGGGAGCCTTATGATTTATGAGAAGAAGAAAGGAAAATTGAAGTGTAGAGAATGCGGAGAATATAGTGTTGAAAGCGACGTTGAGA
CAGAGAATGCTTTGAATTTTATGACCAACAAGTGGCTGGTGATCAGCTCCACTGCTCGCCATGAAAACCATTTGTTGGAACGTCCGTGGAGTGAACAATTCACGGGCATT
CGTGGACCTTCTGAAGGTTGTTCGCCTTCATAA
Protein sequenceShow/hide protein sequence
MDRNDSNDWTGPIIRVRVILNLSCLIQRGVSMLSTEEVVIICPQMYEKLPNFCFECSSFGHLTKECYKEDGNASRTKFYEYGDWLRAPFVNKFSQKMNDDGADGFDGSPK
KEWSNNKGGRGNRWGSRIRSDKERWRENPKENEDYLKKGDTSVSKGSLMIYEKKKGKLKCRECGEYSVESDVETENALNFMTNKWLVISSTARHENHLLERPWSEQFTGI
RGPSEGCSPS