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Sed0005611 (gene) of Chayote v1 genome

Gene IDSed0005611
OrganismSechium edule (Chayote v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationLG01:834952..835490
RNA-Seq ExpressionSed0005611
SyntenySed0005611
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571413.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia]4.4e-2348.82Show/hide
Query:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK
        KK     IS+    F+ + TNPSF +TMG+SY+   TG+SYL+IP  FA  +++  + ++++VSDGRVW+I CG R      +VEMR GWR+F +DN LK
Subjt:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK

Query:  VNDICVFELMETTPHISFIVSIFQPSS
          DICVFELMET+  +SF  +IF+  S
Subjt:  VNDICVFELMETTPHISFIVSIFQPSS

KAG7011178.1 B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-2348.82Show/hide
Query:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK
        KK     IS+    F+ + TNPSF +TMG+SY+   TG+SYL+IP  FA  +++  + ++++VSDGRVW+I CG R      +VEMR GWR+F +DN LK
Subjt:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK

Query:  VNDICVFELMETTPHISFIVSIFQPSS
          DICVFELMET+  +SF  +IF+  S
Subjt:  VNDICVFELMETTPHISFIVSIFQPSS

XP_022928091.1 B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]1.3e-2249.19Show/hide
Query:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK
        KK     IS+    F+ + TNPSF +TMG+SY+   TG+SYL+IP  FA  +++  + ++++VSDGRVW+I CG R      +VEMR GWR+F +DN LK
Subjt:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK

Query:  VNDICVFELMETTPHISFIVSIFQ
          DICVFELMET+  +SF  +IF+
Subjt:  VNDICVFELMETTPHISFIVSIFQ

XP_022971710.1 B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]1.1e-2147.58Show/hide
Query:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK
        KK     I++    F+ +  NPSF +TMG+SY+   TG+SYL+IP+ FA  +++  + + ++VSDGRVW+I CG R      +VEMR GWR+F +DN LK
Subjt:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK

Query:  VNDICVFELMETTPHISFIVSIFQ
          DICVFELMET+  +SF  +IF+
Subjt:  VNDICVFELMETTPHISFIVSIFQ

XP_023513190.1 B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]6.3e-2248.39Show/hide
Query:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK
        KK     IS+    F+ +  NPSF +TMG+SY+   TG+SYL+IP  FA  +++  + ++++VSDGRVW+I CG R      +VEMR GWR+F +DN LK
Subjt:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK

Query:  VNDICVFELMETTPHISFIVSIFQ
          DICVFELMET+  +SF  +IF+
Subjt:  VNDICVFELMETTPHISFIVSIFQ

TrEMBL top hitse value%identityAlignment
A0A6J1EJA7 B3 domain-containing transcription factor VRN1-like6.2e-2349.19Show/hide
Query:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK
        KK     IS+    F+ + TNPSF +TMG+SY+   TG+SYL+IP  FA  +++  + ++++VSDGRVW+I CG R      +VEMR GWR+F +DN LK
Subjt:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK

Query:  VNDICVFELMETTPHISFIVSIFQ
          DICVFELMET+  +SF  +IF+
Subjt:  VNDICVFELMETTPHISFIVSIFQ

A0A6J1G597 B3 domain-containing transcription factor VRN1-like isoform X16.8e-2248.65Show/hide
Query:  NFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETT
        +FK    NPSF +TM  SYI T    +YL++P SFA  YL+ES  + L+V+DGR+W +WCGVR    R + E++ GW+ F  DN LK  D+CVFELM   
Subjt:  NFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETT

Query:  PHISFIVSIFQ
        P + F V+IF+
Subjt:  PHISFIVSIFQ

A0A6J1G5F5 B3 domain-containing transcription factor VRN1-like isoform X26.8e-2248.65Show/hide
Query:  NFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETT
        +FK    NPSF +TM  SYI T    +YL++P SFA  YL+ES  + L+V+DGR+W +WCGVR    R + E++ GW+ F  DN LK  D+CVFELM   
Subjt:  NFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETT

Query:  PHISFIVSIFQ
        P + F V+IF+
Subjt:  PHISFIVSIFQ

A0A6J1I6H9 B3 domain-containing transcription factor VRN1-like5.2e-2247.58Show/hide
Query:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK
        KK     I++    F+ +  NPSF +TMG+SY+   TG+SYL+IP+ FA  +++  + + ++VSDGRVW+I CG R      +VEMR GWR+F +DN LK
Subjt:  KKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLK

Query:  VNDICVFELMETTPHISFIVSIFQ
          DICVFELMET+  +SF  +IF+
Subjt:  VNDICVFELMETTPHISFIVSIFQ

A0A6J1L7I9 B3 domain-containing transcription factor VRN1-like6.8e-2248.65Show/hide
Query:  NFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETT
        +FK    NPSF +TM  SYI T    +YL++P SFA  YL+ES  + L+V+DGR+W +WCGVR    R + E++ GW+ F  DN LK  D+CVFELM   
Subjt:  NFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETT

Query:  PHISFIVSIFQ
        P + F V+IF+
Subjt:  PHISFIVSIFQ

SwissProt top hitse value%identityAlignment
Q851W4 B3 domain-containing protein Os03g06205005.6e-0531.91Show/hide
Query:  PSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQ--VITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETT
        P +   M  S + TD G   + +   FA  YL E +  +  L    G+ W++    RS + R+      GWR+FV+DN L+  DIC+F+L + +
Subjt:  PSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQ--VITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETT

Q851W5 B3 domain-containing protein Os03g06204004.3e-0529.52Show/hide
Query:  PSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQ--VITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETTPHISFI
        P +   M  S + TD G   +     FA  YL E +  +  L       W++    RS + ++   +  GWR+FV DN+L++ DIC+F+LM     ++  
Subjt:  PSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQ--VITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMETTPHISFI

Query:  VSIFQ
        V I +
Subjt:  VSIFQ

Q8L3W1 B3 domain-containing transcription factor VRN15.6e-0532.32Show/hide
Query:  FKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKE-SQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMET
        F+P  TNP F + +  SY+        + +P  FA  YL   S  I +Q+++ + W + C    L +  + +   GW  F  +NNL   D+CVFEL+ T
Subjt:  FKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKE-SQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMET

Q9XIB5 B3 domain-containing protein REM195.6e-0532.32Show/hide
Query:  FKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKE-SQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMET
        F+P  TNP F + +  SY+        + +P  FA  YL   S  I LQ+ + + W + C    L +  + +   GW  F  +NN+   D+CVFEL+ T
Subjt:  FKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKE-SQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMET

Arabidopsis top hitse value%identityAlignment
AT1G49480.1 related to vernalization1 14.0e-0632.32Show/hide
Query:  FKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKE-SQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMET
        F+P  TNP F + +  SY+        + +P  FA  YL   S  I LQ+ + + W + C    L +  + +   GW  F  +NN+   D+CVFEL+ T
Subjt:  FKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKE-SQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMET

AT2G24690.1 Transcriptional factor B3 family protein1.3e-0434.18Show/hide
Query:  LNIPISFAR-NYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELM--ETTPHIS
        L +P+ F R N + +   I L   DG  W     +     R ++ + DGW++FVK N LK  D   F+L+  +TTP +S
Subjt:  LNIPISFAR-NYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELM--ETTPHIS

AT3G18990.1 AP2/B3-like transcriptional factor family protein4.0e-0632.32Show/hide
Query:  FKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKE-SQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMET
        F+P  TNP F + +  SY+        + +P  FA  YL   S  I +Q+++ + W + C    L +  + +   GW  F  +NNL   D+CVFEL+ T
Subjt:  FKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKE-SQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFELMET

AT4G33280.1 AP2/B3-like transcriptional factor family protein2.2e-0430.25Show/hide
Query:  NNASRKKASFGKISKG----PLNFKPMATNP-SFSITMGSSYILTDTGRSYLNIPISF-ARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDG
        N+   +KA    IS G     L+    A +P  F + M  S++++   + +L IP  +  +N L   Q + +QV D   W +   +     R    +  G
Subjt:  NNASRKKASFGKISKG----PLNFKPMATNP-SFSITMGSSYILTDTGRSYLNIPISF-ARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDG

Query:  WRNFVKDNNLKVNDICVFE
        W+ FV+DNNL+  D+CVFE
Subjt:  WRNFVKDNNLKVNDICVFE

AT5G60130.2 AP2/B3-like transcriptional factor family protein6.4e-0433.33Show/hide
Query:  LTDTGRSYLNIPISFARNYLKES--QVITLQVSDGRVWRI----WCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFE
        L D     + +PISF R +L +S  + +T++   G +W++     CG    E+ V V   +GW+  VKD +LK  D   FE
Subjt:  LTDTGRSYLNIPISFARNYLKES--QVITLQVSDGRVWRI----WCGVRSLEERVKVEMRDGWRNFVKDNNLKVNDICVFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATGTGAAATCCGAGATTGTGATAAAGTCAAAGAATAATGCTTCAAGAAAGAAGGCATCATTTGGAAAAATTTCTAAGGGTCCTTTAAATTTCAAACCAATGGC
TACAAATCCATCATTCTCTATTACCATGGGATCTTCATACATTCTCACTGATACAGGAAGAAGCTATTTGAATATTCCAATATCATTTGCAAGAAATTACTTGAAAGAGT
CACAAGTGATCACTCTTCAAGTTTCTGATGGAAGGGTTTGGAGAATTTGGTGCGGTGTGCGGTCGCTAGAAGAGAGAGTGAAGGTTGAAATGAGAGATGGTTGGAGAAAT
TTTGTCAAAGATAATAATTTGAAAGTAAATGATATTTGTGTTTTCGAGTTGATGGAAACAACTCCACATATATCATTTATAGTTAGCATTTTTCAGCCAAGTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATGTGAAATCCGAGATTGTGATAAAGTCAAAGAATAATGCTTCAAGAAAGAAGGCATCATTTGGAAAAATTTCTAAGGGTCCTTTAAATTTCAAACCAATGGC
TACAAATCCATCATTCTCTATTACCATGGGATCTTCATACATTCTCACTGATACAGGAAGAAGCTATTTGAATATTCCAATATCATTTGCAAGAAATTACTTGAAAGAGT
CACAAGTGATCACTCTTCAAGTTTCTGATGGAAGGGTTTGGAGAATTTGGTGCGGTGTGCGGTCGCTAGAAGAGAGAGTGAAGGTTGAAATGAGAGATGGTTGGAGAAAT
TTTGTCAAAGATAATAATTTGAAAGTAAATGATATTTGTGTTTTCGAGTTGATGGAAACAACTCCACATATATCATTTATAGTTAGCATTTTTCAGCCAAGTTCTTGA
Protein sequenceShow/hide protein sequence
MADVKSEIVIKSKNNASRKKASFGKISKGPLNFKPMATNPSFSITMGSSYILTDTGRSYLNIPISFARNYLKESQVITLQVSDGRVWRIWCGVRSLEERVKVEMRDGWRN
FVKDNNLKVNDICVFELMETTPHISFIVSIFQPSS