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Sed0005624 (gene) of Chayote v1 genome

Gene IDSed0005624
OrganismSechium edule (Chayote v1)
DescriptionAminoacyl-tRNA hydrolase
Genome locationLG01:9730163..9731533
RNA-Seq ExpressionSed0005624
SyntenySed0005624
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022962062.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita moschata]5.6e-0941.88Show/hide
Query:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------
        MSES+  NS PPPDD                 D  D    GSV              NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +        
Subjt:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------

Query:  ----LWVDLEQPENIPT
            LW+  EQPENIPT
Subjt:  ----LWVDLEQPENIPT
XP_022996792.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita maxima]2.8e-0841.88Show/hide
Query:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------
        MSES+  NS PPPDD                 D  D    GSV              NKDDP   EYC+P +IDSM+K  L+VKGETQIV +        
Subjt:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------

Query:  ----LWVDLEQPENIPT
            LW+  EQPENIPT
Subjt:  ----LWVDLEQPENIPT
XP_023002513.1 putative peptidyl-tRNA hydrolase PTRHD1 isoform X2 [Cucurbita maxima]1.8e-0740.83Show/hide
Query:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----
        MSES+  NSV P DD G                     D    GSV              NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +     
Subjt:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----

Query:  -------LWVDLEQPENIPT
               LWV  EQPENIPT
Subjt:  -------LWVDLEQPENIPT
XP_023546189.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita pepo subsp. pepo]9.6e-0941.88Show/hide
Query:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------
        MSES+  NS PPPDD                 D  D    GSV              NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +        
Subjt:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------

Query:  ----LWVDLEQPENIPT
            LW+  EQPENIPT
Subjt:  ----LWVDLEQPENIPT
XP_038884124.1 putative peptidyl-tRNA hydrolase PTRHD1 [Benincasa hispida]7.3e-0940Show/hide
Query:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----
        MS+S+  NSVPPPDD G                     D    GSV              NKDDP+  +YC+P +IDSM+K  L+VKGETQIV +     
Subjt:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----

Query:  -------LWVDLEQPENIPT
               LW+  EQPENIPT
Subjt:  -------LWVDLEQPENIPT
TrEMBL top hitse value%identityAlignment
A0A6J1GJ11 Aminoacyl-tRNA hydrolase1.1e-0740.83Show/hide
Query:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----
        MSES   NSV P DD G                     D    GSV              NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +     
Subjt:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----

Query:  -------LWVDLEQPENIPT
               LWV  EQPENIPT
Subjt:  -------LWVDLEQPENIPT
A0A6J1HBR1 Aminoacyl-tRNA hydrolase2.7e-0941.88Show/hide
Query:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------
        MSES+  NS PPPDD                 D  D    GSV              NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +        
Subjt:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------

Query:  ----LWVDLEQPENIPT
            LW+  EQPENIPT
Subjt:  ----LWVDLEQPENIPT
A0A6J1K304 Aminoacyl-tRNA hydrolase1.3e-0841.88Show/hide
Query:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------
        MSES+  NS PPPDD                 D  D    GSV              NKDDP   EYC+P +IDSM+K  L+VKGETQIV +        
Subjt:  MSESSLRNSVPPPDD-----------------DGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI--------

Query:  ----LWVDLEQPENIPT
            LW+  EQPENIPT
Subjt:  ----LWVDLEQPENIPT
A0A6J1KJQ6 Aminoacyl-tRNA hydrolase8.7e-0840.83Show/hide
Query:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----
        MSES+  NSV P DD G                     D    GSV              NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +     
Subjt:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----

Query:  -------LWVDLEQPENIPT
               LWV  EQPENIPT
Subjt:  -------LWVDLEQPENIPT
A0A6J1KTS0 Aminoacyl-tRNA hydrolase8.7e-0840.83Show/hide
Query:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----
        MSES+  NSV P DD G                     D    GSV              NKDDP+  EYC+P +IDSM+K  L+VKGETQIV +     
Subjt:  MSESSLRNSVPPPDDDGG--------------------DRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI-----

Query:  -------LWVDLEQPENIPT
               LWV  EQPENIPT
Subjt:  -------LWVDLEQPENIPT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G10700.1 Peptidyl-tRNA hydrolase II (PTH2) family protein4.6e-0950.85Show/hide
Query:  KDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT
        KDDP  L+YC+P  IDSM+K  L+VKGETQ++ +            LW  +EQPENIPT
Subjt:  KDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRI------------LWVDLEQPENIPT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAATCCAGTTTAAGAAACTCCGTTCCTCCGCCGGATGACGACGGAGGAGACCGCCGGCGTTTTGGTTCAGTAAGTTGTGCTTCGGAGACACCTGATCGATTCGT
GGCTTCTAGGAATAAAGATGATCCATACAATTTGGAGTACTGTAATCCCGTAGACATCGACTCCATGAACAAGACTAATCTCAAGGTGAAGGGAGAAACCCAGATCGTCC
GTATACTCTGGGTAGATTTAGAACAACCAGAAAACATTCCAACGCCAACTAGACTGCTGCAGGCAAGGATCAAGCCATTGTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAATCCAGTTTAAGAAACTCCGTTCCTCCGCCGGATGACGACGGAGGAGACCGCCGGCGTTTTGGTTCAGTAAGTTGTGCTTCGGAGACACCTGATCGATTCGT
GGCTTCTAGGAATAAAGATGATCCATACAATTTGGAGTACTGTAATCCCGTAGACATCGACTCCATGAACAAGACTAATCTCAAGGTGAAGGGAGAAACCCAGATCGTCC
GTATACTCTGGGTAGATTTAGAACAACCAGAAAACATTCCAACGCCAACTAGACTGCTGCAGGCAAGGATCAAGCCATTGTCCTAA
Protein sequenceShow/hide protein sequence
MSESSLRNSVPPPDDDGGDRRRFGSVSCASETPDRFVASRNKDDPYNLEYCNPVDIDSMNKTNLKVKGETQIVRILWVDLEQPENIPTPTRLLQARIKPLS