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Sed0005629 (gene) of Chayote v1 genome

Gene IDSed0005629
OrganismSechium edule (Chayote v1)
DescriptionC3H1-type domain-containing protein
Genome locationLG09:14373286..14380332
RNA-Seq ExpressionSed0005629
SyntenySed0005629
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type
IPR045072 - MKRN-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588269.1 Zinc finger CCCH domain-containing protein 16, partial [Cucurbita argyrosperma subsp. sororia]2.6e-2166.67Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF
        M  K EPCRNFQRG           CQYGERCKFLHVTQQPQK S+FG GMQ SSQQQQKPNPFGF     GQ KA VD+G KQNQ+K +
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF

KAG7022189.1 Zinc finger CCCH domain-containing protein 16 [Cucurbita argyrosperma subsp. argyrosperma]2.6e-2166.67Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF
        M  K EPCRNFQRG           CQYGERCKFLHVTQQPQK S+FG GMQ SSQQQQKPNPFGF     GQ KA VD+G KQNQ+K +
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF

XP_022925231.1 zinc finger CCCH domain-containing protein 16 isoform X1 [Cucurbita moschata]2.6e-2166.67Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF
        M  K EPCRNFQRG           CQYGERCKFLHVTQQPQK S+FG GMQ SSQQQQKPNPFGF     GQ KA VD+G KQNQ+K +
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF

XP_023005674.1 zinc finger CCCH domain-containing protein 16 isoform X1 [Cucurbita maxima]2.6e-2166.67Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF
        M  K EPCRNFQRG           CQYGERCKFLHVTQQPQK S+FG GMQ SSQQQQKPNPFGF     GQ KA VD+G KQNQ+K +
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF

XP_023520667.1 zinc finger CCCH domain-containing protein 16 [Cucurbita pepo subsp. pepo]1.3e-2065.56Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF
        M  K EPCRNFQRG           CQYGERCKFLHVTQQPQK S+FG GMQ SSQ QQKPNPFGF     GQ KA VD+G KQNQ+K +
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF

TrEMBL top hitse value%identityAlignment
A0A061GS52 Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 15.5e-1759.55Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGFG-----QIKAPVDTGFKQNQFKS
        M  K EPCRNFQRG           CQYGERCKFLHV QQ  K ++FG+G Q SS QQQKPNPFGFG     Q K   D G KQNQFK+
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGFG-----QIKAPVDTGFKQNQFKS

A0A6J1CTC5 zinc finger CCCH domain-containing protein 161.4e-1756.67Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF
        M+ K + CRNFQRG           C+YGERC+++H TQQPQ   SFG+GMQ SSQ QQKPNPFGF     GQ KA  D G KQNQ+K F
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF

A0A6J1DLN7 zinc finger CCCH domain-containing protein 16-like1.4e-1756.67Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF
        M+ K + CRNFQRG           C+YGERC+++H TQQPQ   SFG+GMQ SSQ QQKPNPFGF     GQ KA  D G KQNQ+K F
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF

A0A6J1EHE7 zinc finger CCCH domain-containing protein 16 isoform X11.3e-2166.67Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF
        M  K EPCRNFQRG           CQYGERCKFLHVTQQPQK S+FG GMQ SSQQQQKPNPFGF     GQ KA VD+G KQNQ+K +
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF

A0A6J1KZY0 zinc finger CCCH domain-containing protein 16 isoform X11.3e-2166.67Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF
        M  K EPCRNFQRG           CQYGERCKFLHVTQQPQK S+FG GMQ SSQQQQKPNPFGF     GQ KA VD+G KQNQ+K +
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGF-----GQIKAPVDTGFKQNQFKSF

SwissProt top hitse value%identityAlignment
Q5Z807 Zinc finger CCCH domain-containing protein 468.5e-0739.08Show/hide
Query:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVT------QQPQKFSSFGYG--------------MQNSSQQQQKPNPFGFG
        M  + E CRNFQRG           C+YG +C++LH +      QQ  K + FG+G               Q   QQQQKPNPFGFG
Subjt:  MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVT------QQPQKFSSFGYG--------------MQNSSQQQQKPNPFGFG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGAACAAAAATGAACCTTGCAGAAATTTTCAGCGTGGCAGGTATGGAGAATTTCCTTCCTATTTCCGTCTTTGTCAATATGGTGAAAGGTGCAAGTTTCTCCACGT
CACTCAACAACCACAAAAATTTAGTAGCTTTGGCTATGGGATGCAAAATAGTTCGCAGCAACAACAAAAACCAAATCCCTTTGGATTCGGCCAAATTAAAGCACCAGTTG
ATACTGGATTTAAACAAAACCAATTTAAGAGTTTTGTAGGATTAGTGTCTGCCTTGGTCCATTTAATTCGTTTTAGTTCTTTTGAAAGCTTCTACCTGGTTTTCTTTTTT
TCTCAAGCTTTTGTTTATTATTTTATGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGAACAAAAATGAACCTTGCAGAAATTTTCAGCGTGGCAGGTATGGAGAATTTCCTTCCTATTTCCGTCTTTGTCAATATGGTGAAAGGTGCAAGTTTCTCCACGT
CACTCAACAACCACAAAAATTTAGTAGCTTTGGCTATGGGATGCAAAATAGTTCGCAGCAACAACAAAAACCAAATCCCTTTGGATTCGGCCAAATTAAAGCACCAGTTG
ATACTGGATTTAAACAAAACCAATTTAAGAGTTTTGTAGGATTAGTGTCTGCCTTGGTCCATTTAATTCGTTTTAGTTCTTTTGAAAGCTTCTACCTGGTTTTCTTTTTT
TCTCAAGCTTTTGTTTATTATTTTATGTTATGA
Protein sequenceShow/hide protein sequence
MRNKNEPCRNFQRGRYGEFPSYFRLCQYGERCKFLHVTQQPQKFSSFGYGMQNSSQQQQKPNPFGFGQIKAPVDTGFKQNQFKSFVGLVSALVHLIRFSSFESFYLVFFF
SQAFVYYFML