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Sed0005639 (gene) of Chayote v1 genome

Gene IDSed0005639
OrganismSechium edule (Chayote v1)
DescriptionMediator of RNA polymerase II transcription subunit 2-like
Genome locationLG12:731817..733804
RNA-Seq ExpressionSed0005639
SyntenySed0005639
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048973.1 mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa]3.1e-2390.12Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKNSLSRRKKQYEFDL+REK+EKEKAAKKLQAKKN MKVDGSGKKKK  GGFQVGKKKVKTKLTAAAKAKA+QAM+LD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
KGN56523.1 hypothetical protein Csa_010072 [Cucumis sativus]4.1e-2390.12Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKNSLSRRKKQYEFDL+REK+EKEKAAKKLQAKKN MKVDGSGKKKK  GGFQVGKKKVKTKLTA AKAKA+QAMELD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
XP_022147302.1 uncharacterized protein LOC111016287 [Momordica charantia]4.5e-2287.65Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKN+LSRRKKQ+EFDL+REK E+EKAAKKLQAKKN+MKVDGSGK+KK  GGFQVGKKKVKTKLTAAAKAKAAQAMELD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
XP_022941890.1 uncharacterized protein LOC111447114 [Cucurbita moschata]9.1e-2390.12Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKKG--GFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKN+LSRRK Q+EFDL REK+EKEKAAKKLQAKKNKMKVDGSGKKKKG  GFQVGKKKVKTKLTAAAKAKAAQAMELD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKKG--GFQVGKKKVKTKLTAAAKAKAAQAMELDE
XP_030457135.1 uncharacterized protein LOC115678006 [Syzygium oleosum]9.1e-2390.12Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKNSLSRRKKQYEFDL REK EKEKAAKKLQAKKNKMKVDGSGKKKK  GGFQVGK+K+KTKLTA AKAKAAQAMELD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
TrEMBL top hitse value%identityAlignment
A0A0A0L493 Uncharacterized protein2.0e-2390.12Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKNSLSRRKKQYEFDL+REK+EKEKAAKKLQAKKN MKVDGSGKKKK  GGFQVGKKKVKTKLTA AKAKA+QAMELD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
A0A5A7TZC8 Mediator of RNA polymerase II transcription subunit 2-like1.5e-2390.12Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKNSLSRRKKQYEFDL+REK+EKEKAAKKLQAKKN MKVDGSGKKKK  GGFQVGKKKVKTKLTAAAKAKA+QAM+LD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
A0A6J1D208 uncharacterized protein LOC1110162872.2e-2287.65Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKN+LSRRKKQ+EFDL+REK E+EKAAKKLQAKKN+MKVDGSGK+KK  GGFQVGKKKVKTKLTAAAKAKAAQAMELD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKK--GGFQVGKKKVKTKLTAAAKAKAAQAMELDE
A0A6J1FV29 uncharacterized protein LOC1114471144.4e-2390.12Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKKG--GFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKN+LSRRK Q+EFDL REK+EKEKAAKKLQAKKNKMKVDGSGKKKKG  GFQVGKKKVKTKLTAAAKAKAAQAMELD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKKG--GFQVGKKKVKTKLTAAAKAKAAQAMELDE
A0A6J1IED7 uncharacterized protein LOC1114732884.4e-2390.12Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKKG--GFQVGKKKVKTKLTAAAKAKAAQAMELDE
        MSKKN+LSRRK Q+EFDL REK+EKEKAAKKLQAKKNKMKVDGSGKKKKG  GFQVGKKKVKTKLTAAAKAKAAQAMELD+
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKKG--GFQVGKKKVKTKLTAAAKAKAAQAMELDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45860.1 unknown protein5.3e-2174.36Show/hide
Query:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKKGGFQVGKKKVKTKLTAAAKAKAAQAMELD
        MSKKN+L++RKKQ+E++L++EK+ ++K  KKL A KNKMKVDGSGKKKKGGF VGKKK+KTKLT  AKAKAAQAMELD
Subjt:  MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKKGGFQVGKKKVKTKLTAAAKAKAAQAMELD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAGAAGAACAGTCTTTCGCGCAGGAAGAAGCAATATGAATTCGATCTTGAAAGGGAGAAAAAAGAAAAGGAAAAGGCCGCCAAGAAGCTCCAAGCAAAGAAGAA
CAAGATGAAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACTAAGTTGACTGCAGCGGCAAAAGCAAAAGCTGCTCAAG
CAATGGAGCTTGATGAATGA
mRNA sequenceShow/hide mRNA sequence
ACAGGACAGGAAAGTTTTGAAGTAAAATTCGAGTTAGGGTTTATGAGAAGTTGAAGCGCGGCGAATCAGTGCGCAAATTTCCGGCGGCTGGGCTCAATAAAATGTCGAAG
AAGAACAGTCTTTCGCGCAGGAAGAAGCAATATGAATTCGATCTTGAAAGGGAGAAAAAAGAAAAGGAAAAGGCCGCCAAGAAGCTCCAAGCAAAGAAGAACAAGATGAA
GGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACTAAGTTGACTGCAGCGGCAAAAGCAAAAGCTGCTCAAGCAATGGAGC
TTGATGAATGAGGTTTGATGTATATTTTTAGGGATATAGATTGGTGAATTGATATATTTATTTAGTCTTGTGATCTGTAACAGTAAGATTATCTTCATAGTGAACTTTGA
TGATCTTCCACTTGCTTTCACTTGATTTCTAATCTCTTGAATCGCAATTGAATCTAATTGATTGAGGCATTTATACTGATATATACTTTGTGGGATAATTTCATCATACC
CCTTTATTGTTGTAATGTAATTTACAATTTTGGAACTTGAACACTCTTTTTTTCTTATTTCAATCTTTTCCTCTAGCTCTCACTTGTTGCCAG
Protein sequenceShow/hide protein sequence
MSKKNSLSRRKKQYEFDLEREKKEKEKAAKKLQAKKNKMKVDGSGKKKKGGFQVGKKKVKTKLTAAAKAKAAQAMELDE