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Sed0005690 (gene) of Chayote v1 genome

Gene IDSed0005690
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase I subunit like
Genome locationLG07:37903878..37904542
RNA-Seq ExpressionSed0005690
SyntenySed0005690
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032002.1 hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-4369.41Show/hide
Query:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSLHFKSTLNRAFLR-----SQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKE
        MLGFL  P+QW  S      S+PSS+S    SL  +S+L+ +  +      +S+I   R+RF   +S N +GLGG+IK REGE NGAKGSN GDDDLRKE
Subjt:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSLHFKSTLNRAFLR-----SQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKE

Query:  RGPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        RGPVFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  RGPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

XP_022139143.1 uncharacterized protein LOC111010120 [Momordica charantia]1.2e-4873.37Show/hide
Query:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSL----HFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKER
        MLGF   P QWSS+S+ LLSS P+ +S    SL     FK TL+ A L ++S+I RNR RF  FS    +GLGG+IK REGE  GAKGSNGG DDL+KER
Subjt:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSL----HFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKER

Query:  GPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        GPVFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  GPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

XP_022957096.1 uncharacterized protein LOC111458579 [Cucurbita moschata]2.5e-4369.41Show/hide
Query:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSLHFKSTLNRAFLR-----SQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKE
        MLGFL  P+QW  S      S+PSS+S    SL  +S+L+ +  +     S+S+I   R+RF   +S N +GLGG+IK REGE NGAKGS  GDDDLRKE
Subjt:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSLHFKSTLNRAFLR-----SQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKE

Query:  RGPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        RGPVFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  RGPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

XP_022993576.1 uncharacterized protein LOC111489528 [Cucurbita maxima]5.7e-4372.46Show/hide
Query:  MLGFLNRPFQWS-SSSLSLLSS-IPSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERGP
        MLGFL  P+QW  S SLS  SS  P ST    +   FK  L+     S+S+I   R+RFA  +S N +GLGG+IK REGE NGAKGS  GDDDLRKERGP
Subjt:  MLGFLNRPFQWS-SSSLSLLSS-IPSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERGP

Query:  VFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        VFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  VFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

XP_023549272.1 uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo]2.5e-4370.76Show/hide
Query:  MLGFLNRPFQW------SSSSLSLLSSIPSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRK
        MLGFL  P+QW      SSSS     S  SS S P     FK  L+     S+S+I   R+RF   +S N +GLGG+IK REGE NGAKGSNGG DDLRK
Subjt:  MLGFLNRPFQW------SSSSLSLLSSIPSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRK

Query:  ERGPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        ERGPVFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  ERGPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

TrEMBL top hitse value%identityAlignment
A0A1S3BFX0 uncharacterized protein LOC1034894077.5e-4168.45Show/hide
Query:  MLGFLNRPFQWS-SSSLSLLSSI--PSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERG
        MLGFL  P Q   S SL+ L SI  PSS  LP     +K  L+  F  S+  I  NR RF   +S      GG IK REGE NGAK S+ G DDL+KERG
Subjt:  MLGFLNRPFQWS-SSSLSLLSSI--PSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERG

Query:  PVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        PVFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  PVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

A0A5D3CD16 Uncharacterized protein7.5e-4168.45Show/hide
Query:  MLGFLNRPFQWS-SSSLSLLSSI--PSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERG
        MLGFL  P Q   S SL+ L SI  PSS  LP     +K  L+  F  S+  I  NR RF   +S      GG IK REGE NGAK S+ G DDL+KERG
Subjt:  MLGFLNRPFQWS-SSSLSLLSSI--PSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERG

Query:  PVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        PVFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  PVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

A0A6J1CF05 uncharacterized protein LOC1110101205.7e-4973.37Show/hide
Query:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSL----HFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKER
        MLGF   P QWSS+S+ LLSS P+ +S    SL     FK TL+ A L ++S+I RNR RF  FS    +GLGG+IK REGE  GAKGSNGG DDL+KER
Subjt:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSL----HFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKER

Query:  GPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        GPVFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  GPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

A0A6J1GYA2 uncharacterized protein LOC1114585791.2e-4369.41Show/hide
Query:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSLHFKSTLNRAFLR-----SQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKE
        MLGFL  P+QW  S      S+PSS+S    SL  +S+L+ +  +     S+S+I   R+RF   +S N +GLGG+IK REGE NGAKGS  GDDDLRKE
Subjt:  MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSLHFKSTLNRAFLR-----SQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKE

Query:  RGPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        RGPVFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  RGPVFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

A0A6J1JWP5 uncharacterized protein LOC1114895282.7e-4372.46Show/hide
Query:  MLGFLNRPFQWS-SSSLSLLSS-IPSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERGP
        MLGFL  P+QW  S SLS  SS  P ST    +   FK  L+     S+S+I   R+RFA  +S N +GLGG+IK REGE NGAKGS  GDDDLRKERGP
Subjt:  MLGFLNRPFQWS-SSSLSLLSS-IPSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERGP

Query:  VFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        VFNIKWAELLIDPDPDN+LAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Subjt:  VFNIKWAELLIDPDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G40045.1 unknown protein1.8e-1546.36Show/hide
Query:  LSLLSSIPSSTSLPATSLHFKSTLNRAFL-RSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERGPVFNIKWAELLIDPDPD
        L+L   +P +T  P  S +     +   L +S S I R   +    S+K   G GG+      +GNG+K          K++   F+ KW ELL +PD D
Subjt:  LSLLSSIPSSTSLPATSLHFKSTLNRAFL-RSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERGPVFNIKWAELLIDPDPD

Query:  NLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL
        N +AV L G+L WAS+QVL QLFFIS AILVAALKYSFIAALL+FIL+TLL
Subjt:  NLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGGTTTCTCAATCGCCCATTTCAATGGAGTTCTTCATCTCTCTCACTTCTCTCTTCAATCCCATCATCTACTTCCCTCCCTGCAACATCTCTCCACTTCAAATC
CACTCTCAATCGCGCGTTTCTCAGATCGCAATCTCGAATTCATAGAAACCGCGAACGATTCGCTGTGTTTTCGAGCAAAAACGGCGATGGATTGGGCGGAGATATCAAGG
GAAGAGAAGGAGAAGGAAATGGAGCTAAGGGCTCTAATGGCGGCGATGATGATTTGAGGAAAGAACGAGGCCCGGTTTTCAATATCAAATGGGCTGAGCTTCTGATCGAT
CCGGATCCTGATAACTTGTTGGCGGTTGCGTTGACTGGTTTGCTTGCTTGGGCGAGTGTTCAGGTTTTGTGGCAGCTTTTCTTCATCTCTTTGGCTATTTTAGTTGCGGC
TCTTAAGTACTCTTTTATTGCTGCGCTTCTTCTTTTTATTCTAATTACATTACTCTAG
mRNA sequenceShow/hide mRNA sequence
GGATTCGGGTCATTTTGCCTCAGCCAAGAGATGGATGCAGCAATATCAGAACAAAAATGTTAGGGTTTCTCAATCGCCCATTTCAATGGAGTTCTTCATCTCTCTCACTT
CTCTCTTCAATCCCATCATCTACTTCCCTCCCTGCAACATCTCTCCACTTCAAATCCACTCTCAATCGCGCGTTTCTCAGATCGCAATCTCGAATTCATAGAAACCGCGA
ACGATTCGCTGTGTTTTCGAGCAAAAACGGCGATGGATTGGGCGGAGATATCAAGGGAAGAGAAGGAGAAGGAAATGGAGCTAAGGGCTCTAATGGCGGCGATGATGATT
TGAGGAAAGAACGAGGCCCGGTTTTCAATATCAAATGGGCTGAGCTTCTGATCGATCCGGATCCTGATAACTTGTTGGCGGTTGCGTTGACTGGTTTGCTTGCTTGGGCG
AGTGTTCAGGTTTTGTGGCAGCTTTTCTTCATCTCTTTGGCTATTTTAGTTGCGGCTCTTAAGTACTCTTTTATTGCTGCGCTTCTTCTTTTTATTCTAATTACATTACT
CTAGAACTTTTCAATCTTGTATAGTTCGTTTTATGTTTGATTTATTGGATTCCATTCTAACTCTATGTTCTATGTGTTTAAATATGTGGTCTGACTTTACCCCGGTATAG
TGGAG
Protein sequenceShow/hide protein sequence
MLGFLNRPFQWSSSSLSLLSSIPSSTSLPATSLHFKSTLNRAFLRSQSRIHRNRERFAVFSSKNGDGLGGDIKGREGEGNGAKGSNGGDDDLRKERGPVFNIKWAELLID
PDPDNLLAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL