CuGenDBv2

Gene ID	Sed0005695
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	LG13:25233836..25241952
RNA-Seq Expression	Sed0005695
Synteny	Sed0005695
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004136341.2 uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus]

2.1e-103

89.71

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Query:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA P+SM+++ N KFT + NKP+ +SMNSRFRASAEVP+FLPADWH+ HKK+P+GP LHFTAEEAI HQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_008466381.1 PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo]

5.4e-104

90.2

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Query:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA P+SM+++ N KFT + NKPVT+SMNSRFR SAEVP+FLPADWH+ HKK+P+GP LHFTAEEAI HQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022940177.1 uncharacterized protein LOC111445882 [Cucurbita moschata]

3.9e-102

89.71

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Query:  MSCCSSLSAPPTSMNVVNP-KFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA PTSM++++  KF R+ NK V +SMNSRFRASAEVP+FLPADWH+ HKKNPLGPSLHFTAEEAI  QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVVNP-KFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPL+RSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_022981205.1 uncharacterized protein LOC111480415 isoform X1 [Cucurbita maxima]

8.7e-102

89.22

Show/hide

Query:  MSCCSSLSAPPTSMNVVNP-KFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA PTSM++++  KFTR+ NK V +SMNSRFRASAEVP+FLPADWH+ HKKNPLGPSLHFTAEEAI  QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVVNP-KFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

XP_038898556.1 uncharacterized protein LOC120086152 [Benincasa hispida]

1.7e-102

89.71

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Query:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA PTSM+++ N KFT + NKPV +SM SRFRASAEVP+FLPADWH+ HKK+P+GP LHFTAEEAI HQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSLFVEEN FKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LED5 Uncharacterized protein

1.0e-103

89.71

Show/hide

Query:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA P+SM+++ N KFT + NKP+ +SMNSRFRASAEVP+FLPADWH+ HKK+P+GP LHFTAEEAI HQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A1S3CR52 uncharacterized protein LOC103503805

2.6e-104

90.2

Show/hide

Query:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA P+SM+++ N KFT + NKPVT+SMNSRFR SAEVP+FLPADWH+ HKK+P+GP LHFTAEEAI HQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A5D3E6H6 Uncharacterized protein

2.6e-104

90.2

Show/hide

Query:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA P+SM+++ N KFT + NKPVT+SMNSRFR SAEVP+FLPADWH+ HKK+P+GP LHFTAEEAI HQLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVV-NPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPLRRSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1FIV8 uncharacterized protein LOC111445882

1.9e-102

89.71

Show/hide

Query:  MSCCSSLSAPPTSMNVVNP-KFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA PTSM++++  KF R+ NK V +SMNSRFRASAEVP+FLPADWH+ HKKNPLGPSLHFTAEEAI  QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVVNP-KFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        FDPL+RSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

A0A6J1IYU2 uncharacterized protein LOC111480415 isoform X1

4.2e-102

89.22

Show/hide

Query:  MSCCSSLSAPPTSMNVVNP-KFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG
        MSCCSSLSA PTSM++++  KFTR+ NK V +SMNSRFRASAEVP+FLPADWH+ HKKNPLGPSLHFTAEEAI  QLDALRYNDRPHQDYGIEVMYQFAG
Subjt:  MSCCSSLSAPPTSMNVVNP-KFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAG

Query:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG
        F+PL+RSTYFGPFFDLGQFERFRRVFHHS YRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTES+LNDGDAFSG
Subjt:  FDPLRRSTYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSG

Query:  GLAY
        GLAY
Subjt:  GLAY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G25605.1 unknown protein

1.6e-77

67.51

Show/hide

Query:  LSAPPTSMNVVNPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRS
        L +PP+S++       ++ N    ++ N    +S++VP+FL ADW E  +K P GP L F+AE+A+ HQLDAL+YND P  DYGIEVMY+FAGFDP  RS
Subjt:  LSAPPTSMNVVNPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRS

Query:  TYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY
        TYFGPFFDLGQFERFRR+FHHS+YRVLLGHK+RK+LSSLFVEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYWLTESLL+DGD FSGG+AY
Subjt:  TYFGPFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCATGTTGTTCATCCTTATCAGCGCCTCCAACATCCATGAACGTCGTCAACCCTAAATTCACGAGAAACGCCAATAAACCTGTGACGATTTCCATGAATTCTCGCTT
CCGAGCTTCTGCAGAAGTTCCCAATTTTCTCCCCGCCGATTGGCATGAAGAACACAAGAAGAATCCTCTAGGTCCAAGTTTACATTTCACTGCAGAAGAAGCTATTCATC
ACCAGCTAGATGCACTGAGATACAATGATCGACCCCATCAAGATTATGGAATCGAGGTCATGTACCAGTTTGCTGGGTTCGATCCTCTTCGAAGGTCAACGTATTTCGGT
CCATTCTTCGATTTGGGACAGTTTGAAAGATTTAGACGAGTGTTCCACCATTCGGCATATCGTGTATTGCTTGGCCATAAAGAGAGAAAGATCTTAAGCAGTTTGTTTGT
AGAGGAGAACCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATTTTCCAATTTACCATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGT
ATTGGCTTACTGAAAGTTTACTTAACGATGGGGATGCATTTAGTGGAGGCTTGGCTTACTAA

mRNA sequence

Show/hide mRNA sequence

CAAAAAGAAAAGAAACCATAAATGGGCGGCTCCCGGCCCAAAACGGGAATCAATCATCAACAATACTTGTCCGGTTGAAGAAAAAAATGTCATGTTGTTCATCCTTATCA
GCGCCTCCAACATCCATGAACGTCGTCAACCCTAAATTCACGAGAAACGCCAATAAACCTGTGACGATTTCCATGAATTCTCGCTTCCGAGCTTCTGCAGAAGTTCCCAA
TTTTCTCCCCGCCGATTGGCATGAAGAACACAAGAAGAATCCTCTAGGTCCAAGTTTACATTTCACTGCAGAAGAAGCTATTCATCACCAGCTAGATGCACTGAGATACA
ATGATCGACCCCATCAAGATTATGGAATCGAGGTCATGTACCAGTTTGCTGGGTTCGATCCTCTTCGAAGGTCAACGTATTTCGGTCCATTCTTCGATTTGGGACAGTTT
GAAAGATTTAGACGAGTGTTCCACCATTCGGCATATCGTGTATTGCTTGGCCATAAAGAGAGAAAGATCTTAAGCAGTTTGTTTGTAGAGGAGAACCGATTCAAGCAGCG
GGTATGGATACGAGGTTGTCGCCCCAAGGAAGAAGAAATTTTCCAATTTACCATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACTGAAAGTTTACTTA
ACGATGGGGATGCATTTAGTGGAGGCTTGGCTTACTAAAGAGAGTTGCACAAATTGGGTGGCTGGTTGCAAACATAGCTTGATATTGTTGTATTTGTATATTTGAAATGT
AAATCATAGTCTTTTATTATTGTGAACACTTGTAAGTATATACAACTTAGAATTTGTATATATTATTTACATAGTTTCATTCAACAATTGCTACCATTGACAATGCCCCG
TGTAATGTATGTTATAACTACATGAGTG

Protein sequence

Show/hide protein sequence

MSCCSSLSAPPTSMNVVNPKFTRNANKPVTISMNSRFRASAEVPNFLPADWHEEHKKNPLGPSLHFTAEEAIHHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFG
PFFDLGQFERFRRVFHHSAYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESLLNDGDAFSGGLAY

Sed0005695 (gene) of Chayote v1 genome