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Sed0005738 (gene) of Chayote v1 genome

Gene IDSed0005738
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L17
Genome locationLG14:2408956..2412476
RNA-Seq ExpressionSed0005738
SyntenySed0005738
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000456 - Ribosomal protein L17
IPR036373 - Ribosomal protein L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE7998269.1 hypothetical protein FH972_002830 [Carpinus fangiana]3.8e-7692.45Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEG+LCAARRA AFVRGDDVIHKLFTELAYRYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI
        VGDAAPMAYIEFIDR+NELRQSKPPTPQ PQ+APLDPW RSRLTRQFAPPKE KS+ EI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI

XP_007137704.1 hypothetical protein PHAVU_009G148700g [Phaseolus vulgaris]1.4e-7591.82Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGT CAARRA +FVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI
        VGDAAPMAYIEFIDRENELRQ+KPPTPQ PQ+APLDPW RSRL+RQFAPPKE KS S++
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI

XP_017232403.1 PREDICTED: 50S ribosomal protein L17 [Daucus carota subsp. sativus]4.9e-7693.12Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKPPTPQ PQ+APLDPW RSRL++QFAPPKE K SDS+I
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI

XP_027338436.1 uncharacterized protein LOC113852407 isoform X1 [Abrus precatorius]2.4e-7590.57Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEG++CAARRA +FVRGDDV+HKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPTPQ P +APLDPW RSRL+RQFAPPKE KS+S++
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI

XP_038713510.1 50S ribosomal protein L17-like [Tripterygium wilfordii]4.2e-7594.16Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEG+LCAARRA AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK
        VGDAAPMAYIEF+DRENELRQSKPPTPQ PQ+APLDPW RSRLTR FAPPKE K
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK

TrEMBL top hitse value%identityAlignment
A0A166G9G3 Uncharacterized protein2.4e-7693.12Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKPPTPQ PQ+APLDPW RSRL++QFAPPKE K SDS+I
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI

A0A2N9GBE6 Uncharacterized protein4.0e-7691.82Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKL RPTGHRMSM RTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEG+LCAARRA AFVRGDDVIHKLFTELAYRYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI
        VGDAAPMAYIEFIDRENELRQSKPPTPQ PQKAPLDPW RSRL++QFAPPKE +S+SEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI

A0A5B7B0M7 Uncharacterized protein1.5e-7592.5Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGTLCAARRA AFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKPPTPQ PQ+APLDPW +SRL+RQFAPPKE + S+SEI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI

A0A5N6QHZ8 Uncharacterized protein1.8e-7692.45Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKL RPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEG+LCAARRA AFVRGDDVIHKLFTELAYRYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI
        VGDAAPMAYIEFIDR+NELRQSKPPTPQ PQ+APLDPW RSRLTRQFAPPKE KS+ EI
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI

V7AYM0 Uncharacterized protein6.9e-7691.82Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEGT CAARRA +FVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI
        VGDAAPMAYIEFIDRENELRQ+KPPTPQ PQ+APLDPW RSRL+RQFAPPKE KS S++
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI

SwissProt top hitse value%identityAlignment
A0L5Z9 50S ribosomal protein L172.7e-2955.75Show/hide
Query:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGD-DVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGD
        R+L R T HR +M++ M+  L KHERIETTV +AKELR +A+ ++ LGK G L A R+A + + GD +V+HKLFT+LA R KDR GGYTR+L+TR R GD
Subjt:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGD-DVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGD

Query:  AAPMAYIEFIDRE
         APM++IE ++R+
Subjt:  AAPMAYIEFIDRE

B3E858 50S ribosomal protein L175.7e-2753.64Show/hide
Query:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR T HR++M R MV+ L+ HERI TT AKAKE+R +A+ M+ LGK G L A R+A A++R   V+ KLF+ +A RYKDRAGGYTR+++   R+GDA
Subjt:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFID
        A ++ IE ++
Subjt:  APMAYIEFID

C6E4M9 50S ribosomal protein L171.2e-2745.93Show/hide
Query:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR T HR++M R MV+  ++HE+I TT AKAKELR +A+ M+ LGK G L A R+A A++R   V+ KLFTE+A RY +R GGYTR+++  IR GD 
Subjt:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWA
        AP++ +E ++ E + +++     ++P+ A   P A
Subjt:  APMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWA

Q39XX8 50S ribosomal protein L175.7e-2748.74Show/hide
Query:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR T HR++M R MV+  ++HERI TT AKAKELR +A+ M+ LGK G L A R+A +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD 
Subjt:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFIDRENELRQSK
        AP++ IE ++ +   ++ K
Subjt:  APMAYIEFIDRENELRQSK

Q749B4 50S ribosomal protein L171.8e-2850.4Show/hide
Query:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA
        R+LGR T HR++M R MV+ L  HERI TT AKAKELR +A+ M+ LGK G L A R+A +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD 
Subjt:  RKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDA

Query:  APMAYIEFIDR--ENELRQSKPPTP
        AP++ IE ++   E ++++SKP  P
Subjt:  APMAYIEFIDR--ENELRQSKPPTP

Arabidopsis top hitse value%identityAlignment
AT3G54210.1 Ribosomal protein L17 family protein1.5e-2246.3Show/hide
Query:  KLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA
        KL RP   R ++LR + +QL+KH RI+TT A+A  +R+  D M+ L K+G+L   R+A  ++    ++H LF E+  RY +R GGYTR++RT  R GD A
Subjt:  KLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAA

Query:  PMAYIEFI
        PMAYIE +
Subjt:  PMAYIEFI

AT5G09770.1 Ribosomal protein L17 family protein7.5e-7587.5Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRP GHRMSMLRTMVSQLVKHERIETTV KAKE+RRLADNM+QLGKEG+L AARRA  FVRGDDV+HK+FTELA+RYKDRAGGYTRLLRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKP TPQ PQ+ PLDPW RSRLTRQFAPPKE K  DSE+
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI

AT5G64650.1 Ribosomal protein L17 family protein4.9e-7485.62Show/hide
Query:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR
        MTKFRKLGRP GHRMSMLRTMVSQLV+HERIETTV KAKE+RRLADNM+QLGKEG+L AARRA  FVRGDDV+HK+FTELA+RYKDRAGGYTR+LRTRIR
Subjt:  MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIR

Query:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI
        VGDAAPMAYIEFIDRENELRQSKP TPQ P + PLDPWARSRLTRQ+APPKE K SDS++
Subjt:  VGDAAPMAYIEFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETK-SDSEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAAGTTCAGAAAGCTTGGTCGACCTACGGGTCACCGGATGTCGATGCTCAGAACAATGGTTTCCCAGTTGGTGAAGCACGAGCGCATTGAGACTACTGTTGCAAA
GGCTAAAGAACTTCGCCGGCTTGCTGATAATATGGTCCAACTTGGAAAGGAGGGCACTCTTTGTGCTGCAAGGCGTGCTGGTGCATTTGTTCGTGGCGACGATGTCATTC
ACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCAGGTGGATATACAAGGCTTCTTCGGACTCGTATACGTGTTGGTGATGCTGCACCAATGGCTTATATC
GAATTTATTGATAGAGAAAATGAGCTTAGACAGTCAAAGCCACCAACTCCTCAATCACCACAGAAGGCGCCATTGGATCCATGGGCAAGATCACGACTTACCAGGCAGTT
CGCACCGCCCAAAGAGACAAAATCCGACTCTGAAATCTGA
mRNA sequenceShow/hide mRNA sequence
AGCCCACTTGCCTGTCTCCACTGCATTTTCGGCTCCTTCTTCTTCATCGCATCAAAAACCCCAAAAACCAAAATTAGGGGTTTTTCATTTTTGTTCGAGCTCTGTCTCTG
CTCTCGATCCGCCACCAACAATGACGAAGTTCAGAAAGCTTGGTCGACCTACGGGTCACCGGATGTCGATGCTCAGAACAATGGTTTCCCAGTTGGTGAAGCACGAGCGC
ATTGAGACTACTGTTGCAAAGGCTAAAGAACTTCGCCGGCTTGCTGATAATATGGTCCAACTTGGAAAGGAGGGCACTCTTTGTGCTGCAAGGCGTGCTGGTGCATTTGT
TCGTGGCGACGATGTCATTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCAGGTGGATATACAAGGCTTCTTCGGACTCGTATACGTGTTGGTGATG
CTGCACCAATGGCTTATATCGAATTTATTGATAGAGAAAATGAGCTTAGACAGTCAAAGCCACCAACTCCTCAATCACCACAGAAGGCGCCATTGGATCCATGGGCAAGA
TCACGACTTACCAGGCAGTTCGCACCGCCCAAAGAGACAAAATCCGACTCTGAAATCTGATACTCTTTCTTAGCAATAAGAAGGCTTTTTATTTACCATCTAGCCACCCT
TTCTCATTTGTTTTACAAATTTCAGATGTAAAAACCAAACAAGTATAGACATTGCTTTTCAAATATTATCTTTTGTTCCATATGCTTAAAGCTTTCCTCCAAACAAAGAG
TGAATTTTCAGCTTTGAAAGTTGCACATTTCTTGAGAATTCCATGCACTGCTTCATCTAACATTATTACATGACATTGGACCTTAAATGGATGAAG
Protein sequenceShow/hide protein sequence
MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKELRRLADNMVQLGKEGTLCAARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYI
EFIDRENELRQSKPPTPQSPQKAPLDPWARSRLTRQFAPPKETKSDSEI