; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0005745 (gene) of Chayote v1 genome

Gene IDSed0005745
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG12:9310147..9310602
RNA-Seq ExpressionSed0005745
SyntenySed0005745
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]9.9e-1031.88Show/hide
Query:  SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSL
        ++ RN  GEV+  +S     V + +  E L  ++A+EFA+  G   + +  D++ V+  + ++S D S VG +V +IK L S L  V F WV+R + N +
Subjt:  SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSL

Query:  AHKLARFVVLETVEHQWMEEVPTFCSSIYNFELVKDNI
        AH LA+F      +  WME+ P         + +  NI
Subjt:  AHKLARFVVLETVEHQWMEEVPTFCSSIYNFELVKDNI

XP_023927486.1 uncharacterized protein LOC112038880 [Quercus suber]1.3e-0934.33Show/hide
Query:  IDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLA
        I RN +G V+  +S+QI    + E VE L  ++A+ FA  LG  ++E+  D+  V   I    +DRS +G ++ +IK L S+ + +    + R E N +A
Subjt:  IDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLA

Query:  HKLARFVVLETVEHQWMEEVPTFCSSIYNFELVK
        HKLAR  V  +    WME VP+    +Y  +L++
Subjt:  HKLARFVVLETVEHQWMEEVPTFCSSIYNFELVK

XP_030922950.1 uncharacterized protein LOC115949814 [Quercus lobata]1.7e-0934.09Show/hide
Query:  IDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLA
        I RN  G V+  +++QI    + E VE L T+ AL FA+ LG  R+ +  D   ++  I+  ++  S  G I+ +I  L S  +YV F  + R + N +A
Subjt:  IDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLA

Query:  HKLARFVVLETVEHQWMEEVPTFCSSIYNFEL
        HKLAR  +   ++  WME +    + +YNF+L
Subjt:  HKLARFVVLETVEHQWMEEVPTFCSSIYNFEL

XP_030941688.1 uncharacterized protein LOC115966628 [Quercus lobata]5.8e-1035.77Show/hide
Query:  SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSL
        +I RN RGEV+  +S +   V N E  EAL  + A+EFAI  G   + +  D V V+  + + S+D+S +G +  +I+ L   L +     V RG AN +
Subjt:  SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSL

Query:  AHKLARFVVLETVEHQWMEEVPTFCSSIYNFELVKDN
        AH LARF    + E  W+EE P   S     +L+  N
Subjt:  AHKLARFVVLETVEHQWMEEVPTFCSSIYNFELVKDN

XP_030973303.1 uncharacterized protein LOC115993151 [Quercus lobata]4.9e-0930.16Show/hide
Query:  GEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARF
        G +I  +S++I+   + + VEAL  + AL FA  + + +  +  D+++V+  + N   +R+++G I+ +I+ LG+ + +  F+ + RG  N LAH LA+ 
Subjt:  GEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARF

Query:  VVLETVEHQWMEEVPTFCSSIYNFEL
         VL      W+EE+P     +  F+L
Subjt:  VVLETVEHQWMEEVPTFCSSIYNFEL

TrEMBL top hitse value%identityAlignment
A0A2N9E9A1 Reverse transcriptase domain-containing protein4.1e-0933.61Show/hide
Query:  SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSL
        +I RN RGEV+  + ++I    + E VEA   K A+ F + LG+Q +++  D+++++  +Q  S   +  G ++ +   L  NL   QF+ V R + NS+
Subjt:  SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSL

Query:  AHKLARFVVLETVEHQWMEEVP
        AH LA+   L      WME VP
Subjt:  AHKLARFVVLETVEHQWMEEVP

A0A2N9GZI9 Reverse transcriptase domain-containing protein1.8e-0934.43Show/hide
Query:  SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSL
        +I RN RGEV+  + ++I    + E VEA   K A+ F + LGLQ +++  D+++++  +Q  S   +  G ++ +   L  NL   QF+ V R + NS+
Subjt:  SIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSL

Query:  AHKLARFVVLETVEHQWMEEVP
        AH LA+   L      WME VP
Subjt:  AHKLARFVVLETVEHQWMEEVP

A0A7J8WM62 RNase H domain-containing protein4.1e-0937.86Show/hide
Query:  EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSS
        EAL   +ALEFA+ +G Q IEM  D+   +   Q  ++DR E+G  + EIK L +  +++ F +V   EAN +AH +A+     T  H W+EEVP     
Subjt:  EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSS

Query:  IYN
        + N
Subjt:  IYN

A0A7J9CXY0 RNase H domain-containing protein3.1e-0937.86Show/hide
Query:  EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSS
        EAL   +ALEFA+ +G Q IEM  D+   +   Q  ++DR E+G  + EIK L +  +++ F +V   EAN +AH +A+     T  H W+EEVP     
Subjt:  EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSS

Query:  IYN
        + N
Subjt:  IYN

A0A7J9N7D8 RNase H domain-containing protein6.9e-0937.86Show/hide
Query:  EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSS
        EAL   +ALEFA+ +G Q IEM  D+   +   Q  ++DR E+G  + EIK L +  +++ F +V   EAN +AH +A+     T  H W+EEVP     
Subjt:  EALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLARFVVLETVEHQWMEEVPTFCSS

Query:  IYN
        + N
Subjt:  IYN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAA
GGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAG
TGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGC
TTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGA
CGATCTTCGTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGTAAAGTATCAATTGATAGAAATTGGAGGGGAGAGGTGATATTCCTAATCTCTAAACAAATCGTTGAGGTGGTGAATCCGGAGTTTGTGGAAGCTTTGACTACTAA
GGAAGCTTTGGAATTTGCTATTTCTTTGGGTCTGCAACGAATTGAGATGCACTACGACGCTGTGCAGGTGGTAGGGTTAATTCAAAATGCATCAATTGACCGTTCTGAAG
TGGGTAGGATAGTTTATGAAATCAAAGTTCTTGGTTCTAATCTAAACTACGTCCAATTTTTGTGGGTTAGCCGTGGTGAAGCAAACTCTTTGGCACACAAGTTAGCCCGC
TTTGTGGTTTTAGAGACGGTTGAACACCAGTGGATGGAAGAAGTCCCGACTTTTTGTTCAAGTATTTACAATTTTGAGCTTGTGAAGGATAACATCTTCTGTGTGGGAGA
CGATCTTCGTCTTTAA
Protein sequenceShow/hide protein sequence
MRKVSIDRNWRGEVIFLISKQIVEVVNPEFVEALTTKEALEFAISLGLQRIEMHYDAVQVVGLIQNASIDRSEVGRIVYEIKVLGSNLNYVQFLWVSRGEANSLAHKLAR
FVVLETVEHQWMEEVPTFCSSIYNFELVKDNIFCVGDDLRL