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Sed0005753 (gene) of Chayote v1 genome

Gene IDSed0005753
OrganismSechium edule (Chayote v1)
DescriptionDynein light chain
Genome locationLG04:32467855..32471844
RNA-Seq ExpressionSed0005753
SyntenySed0005753
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458417.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo]5.7e-5393.22Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GNLMVKSVSEDRKPPA  A TG KIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]2.5e-5393.22Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GNLMVKSVSEDRK P A ATTG KIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

XP_023006429.1 dynein light chain 1, cytoplasmic [Cucurbita maxima]9.6e-5392.37Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GNLMVKSVSEDRK P   ATTG KIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

XP_023513722.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]2.8e-5292.37Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GN MVKSVSEDRK P A ATTG KIVIKSADMFGDVQKEAVDVAI AFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

XP_038906782.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]3.3e-5393.22Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GNLMVKSVSEDRKPP A ATTG KIVIKSADMFGDVQKEA++VAIAAFEKHSVEKD AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A1S3C7T8 Dynein light chain2.7e-5393.22Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GNLMVKSVSEDRKPPA  A TG KIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

A0A6J1EQC6 Dynein light chain3.0e-5291.53Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GN MVK+VSEDRK P A ATTG KIVIKSADMFGDVQKEAVDVAI AFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

A0A6J1H8A5 Dynein light chain1.2e-5393.22Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GNLMVKSVSEDRK P A ATTG KIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

A0A6J1KH59 Dynein light chain4.0e-5290.68Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GN MVK+VSEDRK P A ATTG KIVIKSADMFGDVQKEAVD+AI AFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

A0A6J1L253 Dynein light chain4.7e-5392.37Show/hide
Query:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MSNDAKRSI+GNLMVKSVSEDRK P   ATTG KIVIKSADMFGDVQKEA+DVAIAAFEKHSVEKD AE+IKKEFDKRHGPTWHCIVGRNFGSYVTHETN
Subjt:  MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic5.3e-3069.41Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        K VIK+ADM  D+Q++A+D A  A EK+++EKD A +IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q39580 Dynein 8 kDa light chain, flagellar outer arm5.3e-3066.67Show/hide
Query:  ATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        A+  +K VIK+ADM  ++Q +AVD A  A EK+++EKD A +IKKEFD++H PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  ATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic5.3e-3070.59Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        K VIK+ADM  D+Q++AVD A  A EK+++EKD A +IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic5.3e-3070.59Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        K VIK+ADM  D+Q++AVD A  A EK+++EKD A +IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic5.3e-3070.59Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        K VIK+ADM  D+Q++AVD A  A EK+++EKD A +IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein2.1e-1358.49Show/hide
Query:  KDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        K  A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  KDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 117.5e-1140Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVE--KDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM   +Q +A+  A  A +   V   K  A  IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVE--KDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein3.8e-3966.67Show/hide
Query:  KRSIKGNLMVKSVSEDRKPP----AAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        K+S+ G    +++ +DR+       A+   G + VIKSADM  D+QKEA+++AI+AFEK+SVEKD AE IKKEFDK+HG TWHCIVGRNFGSYVTHETNH
Subjt:  KRSIKGNLMVKSVSEDRKPP----AAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

AT4G27360.1 Dynein light chain type 1 family protein5.7e-1140Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEK--DAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K V+   DM   ++++A+ +A  A +   V +    A FIKKEFD+ +G  W CIVG +FGS+VTH +  F++F +    +LLFK
Subjt:  KIVIKSADMFGDVQKEAVDVAIAAFEKHSVEK--DAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein2.2e-1544.14Show/hide
Query:  KGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVA---IAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFY
        +G   V  V  D      AA     + I +ADM G +Q  A   A   + + EK S  K  A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF 
Subjt:  KGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVA---IAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFY

Query:  LDQKAVLLFKS
        +D+  VLLFK+
Subjt:  LDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACGATGCGAAGAGAAGCATCAAAGGCAATCTGATGGTGAAATCTGTGTCGGAAGATCGGAAACCGCCGGCGGCGGCGGCGACTACTGGAACGAAAATTGTTAT
CAAGAGTGCTGATATGTTTGGTGATGTCCAGAAGGAGGCTGTTGATGTCGCCATAGCTGCATTTGAGAAGCATAGTGTGGAGAAGGATGCAGCGGAGTTTATTAAGAAGG
AGTTTGATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGCCGTAATTTTGGTTCATATGTGACGCACGAGACAAACCACTTTGTTTACTTCTACTTGGATCAGAAA
GCAGTTTTACTATTCAAATCAGGTTGA
mRNA sequenceShow/hide mRNA sequence
CCTACCGACAGCTCCATTAGAGAGAAGATTCCAAAAGCTGCAATTAATTCCCGAAAGGGCTTAAACCTTTCTTCTTCATGCTCTCAGATTCTGAGAAATCACAATTTCAA
AAGCTACGCTAACAATTTCCAGTTAAAGCAATTCCAAATTTCTCGAATCGAAACTCGTGAAGTAGCTCCTCTCATCGGAGATCGGAGAAGAAGAACCGGAAGAAATGAGC
AACGATGCGAAGAGAAGCATCAAAGGCAATCTGATGGTGAAATCTGTGTCGGAAGATCGGAAACCGCCGGCGGCGGCGGCGACTACTGGAACGAAAATTGTTATCAAGAG
TGCTGATATGTTTGGTGATGTCCAGAAGGAGGCTGTTGATGTCGCCATAGCTGCATTTGAGAAGCATAGTGTGGAGAAGGATGCAGCGGAGTTTATTAAGAAGGAGTTTG
ATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGCCGTAATTTTGGTTCATATGTGACGCACGAGACAAACCACTTTGTTTACTTCTACTTGGATCAGAAAGCAGTT
TTACTATTCAAATCAGGTTGATAAACATGTATATTATGCAGATTCATGAATCTGATTAACTGATTATGATCATGGCTCTTTAATCAAATGATGATACCCTTGTGGACAAG
ACAGTCTTCTTGCTCAAGCCACTTTGGCCTTTAATGTAGACATAATCAGCTTGTTTGCCCAAGGCAAACAGTAGCATTATGTATAAAATCATTGTGTTAAAAACTAAAGT
ACTTTTTTCTTCATGTTGATTGCGCTTGAAGCTGTTTCATATTTTGGATATGTTCTATTTTACTAAAGAGCAATACTTATTAAGGATGGGTAAGTATTTTTATAACCAC
Protein sequenceShow/hide protein sequence
MSNDAKRSIKGNLMVKSVSEDRKPPAAAATTGTKIVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDAAEFIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQK
AVLLFKSG