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Sed0005783 (gene) of Chayote v1 genome

Gene IDSed0005783
OrganismSechium edule (Chayote v1)
Descriptionprotein TAPETUM DETERMINANT 1-like
Genome locationLG08:37270906..37272907
RNA-Seq ExpressionSed0005783
SyntenySed0005783
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573145.1 Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. sororia]9.7e-6194.02Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEV NAC TGCDI+ IHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVCN
        YANTFPYPLSVS VVCN
Subjt:  YANTFPYPLSVSRVVCN

XP_022137731.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia]7.5e-6194.87Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EA  EEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIY IHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVCN
        YANTFPYPLSVS VVC+
Subjt:  YANTFPYPLSVSRVVCN

XP_022955262.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata]2.0e-6194.87Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC TGCDI+ IHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVCN
        YANTFPYPLSVS VVCN
Subjt:  YANTFPYPLSVSRVVCN

XP_022994477.1 protein TAPETUM DETERMINANT 1 [Cucurbita maxima]2.0e-6194.87Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC TGCDI+ IHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVCN
        YANTFPYPLSVS VVCN
Subjt:  YANTFPYPLSVSRVVCN

XP_023542781.1 protein TAPETUM DETERMINANT 1 [Cucurbita pepo subsp. pepo]2.0e-6194.87Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC TGCDI+ IHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVCN
        YANTFPYPLSVS VVCN
Subjt:  YANTFPYPLSVSRVVCN

TrEMBL top hitse value%identityAlignment
A0A6J1C840 protein TAPETUM DETERMINANT 1-like isoform X13.6e-6194.87Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EA  EEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIY IHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVCN
        YANTFPYPLSVS VVC+
Subjt:  YANTFPYPLSVSRVVCN

A0A6J1EDD3 protein TAPETUM DETERMINANT 1-like4.0e-6093.97Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EA  EEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIY IHFKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVC
        YANT+PYPLSVS VVC
Subjt:  YANTFPYPLSVSRVVC

A0A6J1GTG1 protein TAPETUM DETERMINANT 1-like9.5e-6294.87Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC TGCDI+ IHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVCN
        YANTFPYPLSVS VVCN
Subjt:  YANTFPYPLSVSRVVCN

A0A6J1JVY2 protein TAPETUM DETERMINANT 19.5e-6294.87Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC TGCDI+ IHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVCN
        YANTFPYPLSVS VVCN
Subjt:  YANTFPYPLSVSRVVCN

A0A6J1KH78 protein TAPETUM DETERMINANT 1-like4.0e-6093.97Show/hide
Query:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ
        LT EA  EEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIY IHFKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGGTLSFQ
Subjt:  LTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQ

Query:  YANTFPYPLSVSRVVC
        YANT+PYPLSVS VVC
Subjt:  YANTFPYPLSVSRVVC

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058356.0e-0538.89Show/hide
Query:  YTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTLSFQYANTFPYPL
        + VEV+N C   C I ++  KC  F  + L++P   + L     +C+VNDG PL    TLSF Y+NT  + L
Subjt:  YTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTLSFQYANTFPYPL

Q1G3T1 TPD1 protein homolog 12.3e-3650Show/hide
Query:  MFLFNAGVLVLLSSSTMT---DLSTNRRVFAICV--FFS------AVSAFLTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT
        +F    GVL+ LS S      + S +RR  A+    F S      A+S  L       + T   G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+CV+
Subjt:  MFLFNAGVLVLLSSSTMT---DLSTNRRVFAICV--FFS------AVSAFLTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT

Query:  GCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSRVVC
         C+I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQYAN+F YPLSV+ V C
Subjt:  GCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSRVVC

Q2QR54 TPD1 protein homolog 1A4.6e-2956.44Show/hide
Query:  DIVINQGPTAPLPTGIPTYTVEVVNACVTG------CDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSRVV
        DI I QG   PLP+G+P YTV+V+N C  G      C I  IH +CGWFSS  L++PRVF+RL +DDCL+NDG+PL+ G T+SF+Y N+FPY LSVS   
Subjt:  DIVINQGPTAPLPTGIPTYTVEVVNACVTG------CDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSRVV

Query:  C
        C
Subjt:  C

Q6TLJ2 Protein TAPETUM DETERMINANT 16.4e-3967.59Show/hide
Query:  EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYP
        EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G TLSF YANTFPY 
Subjt:  EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYP

Query:  LSVSRVVC
        LSV+ V C
Subjt:  LSVSRVVC

Q8S6P9 TPD1 protein homolog 1B1.3e-2343.81Show/hide
Query:  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSV
        R+  + C++ ++V+ Q     LP+GIPTY+VE++N C T C +Y +H  CG F+SA L++P  F+R+ ++DCLV  G  L     +SFQY+N+F YPL+V
Subjt:  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSV

Query:  SRVVC
        + V C
Subjt:  SRVVC

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein4.3e-0638.89Show/hide
Query:  YTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTLSFQYANTFPYPL
        + VEV+N C   C I ++  KC  F  + L++P   + L     +C+VNDG PL    TLSF Y+NT  + L
Subjt:  YTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTLSFQYANTFPYPL

AT1G32583.1 FUNCTIONS IN: molecular_function unknown1.6e-3750Show/hide
Query:  MFLFNAGVLVLLSSSTMT---DLSTNRRVFAICV--FFS------AVSAFLTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT
        +F    GVL+ LS S      + S +RR  A+    F S      A+S  L       + T   G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+CV+
Subjt:  MFLFNAGVLVLLSSSTMT---DLSTNRRVFAICV--FFS------AVSAFLTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT

Query:  GCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSRVVC
         C+I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQYAN+F YPLSV+ V C
Subjt:  GCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSRVVC

AT4G24972.1 tapetum determinant 14.5e-4067.59Show/hide
Query:  EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYP
        EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G TLSF YANTFPY 
Subjt:  EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYP

Query:  LSVSRVVC
        LSV+ V C
Subjt:  LSVSRVVC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTGTTCAACGCAGGCGTTCTAGTGCTTCTCTCTTCATCGACGATGACAGATCTGTCTACGAATCGGCGAGTATTCGCGATTTGCGTCTTCTTCTCTGCCGTATC
TGCTTTTCTTACAGGAGAAGCAGCATTTGAGGAACCAACCAGAATTTGGGGAGAAAAGTGTACAAAATCAGACATAGTGATTAACCAAGGCCCCACGGCTCCACTTCCAA
CAGGTATTCCCACGTACACTGTGGAGGTTGTGAATGCTTGTGTCACTGGCTGTGACATCTATAGCATCCACTTCAAATGTGGCTGGTTCAGCTCGGCCCATCTCATCAAT
CCTAGAGTCTTCAAGCGCCTTCGCTACGATGACTGTCTCGTCAACGACGGAAAGCCTCTAGTCTACGGTGGCACGCTCTCTTTCCAGTATGCAAACACTTTTCCTTACCC
GCTTTCGGTCTCCAGAGTTGTCTGCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTGTTCAACGCAGGCGTTCTAGTGCTTCTCTCTTCATCGACGATGACAGATCTGTCTACGAATCGGCGAGTATTCGCGATTTGCGTCTTCTTCTCTGCCGTATC
TGCTTTTCTTACAGGAGAAGCAGCATTTGAGGAACCAACCAGAATTTGGGGAGAAAAGTGTACAAAATCAGACATAGTGATTAACCAAGGCCCCACGGCTCCACTTCCAA
CAGGTATTCCCACGTACACTGTGGAGGTTGTGAATGCTTGTGTCACTGGCTGTGACATCTATAGCATCCACTTCAAATGTGGCTGGTTCAGCTCGGCCCATCTCATCAAT
CCTAGAGTCTTCAAGCGCCTTCGCTACGATGACTGTCTCGTCAACGACGGAAAGCCTCTAGTCTACGGTGGCACGCTCTCTTTCCAGTATGCAAACACTTTTCCTTACCC
GCTTTCGGTCTCCAGAGTTGTCTGCAACTGAAACGGCATGAGCCAAAACCATCTAGGAGATGTTCATATATGAAGCATTAGAAGCAGCTGCAGGTACTTTAATCGATTAC
TGATTGACATTGGCCCCTCATTTT
Protein sequenceShow/hide protein sequence
MFLFNAGVLVLLSSSTMTDLSTNRRVFAICVFFSAVSAFLTGEAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYSIHFKCGWFSSAHLIN
PRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSRVVCN