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Sed0005803 (gene) of Chayote v1 genome

Gene IDSed0005803
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG03:5727274..5727588
RNA-Seq ExpressionSed0005803
SyntenySed0005803
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022754074.1 uncharacterized protein LOC111302415 [Durio zibethinus]3.4e-0934.69Show/hide
Query:  KRGWNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKKRFQDRS
        K+ W  P+++++K+N DG       + GIGV+IR++K +V+ A+S+P+  + +A  VE LA+ + +E    +GF ++E+E  A+ ++ LLK    D S
Subjt:  KRGWNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKKRFQDRS

XP_041009359.1 uncharacterized protein LOC121253410 [Juglans microcarpa x Juglans regia]1.7e-0844.94Show/hide
Query:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKK
        W  P    FKLNVDG    N++  GIGV++R+ KGEV++A SK    I DA  +E LAI  GL++   LG + L +ES A+ +V  L+K
Subjt:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKK

XP_042952128.1 uncharacterized protein LOC122289214 [Carya illinoinensis]9.8e-0943.82Show/hide
Query:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKK
        W   +   FKLNVDG    N+   GIG I+R+ KGEV++A+SK    + DA  +E LAI +GL++ L LG Q L +ES A+ +V  + K
Subjt:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKK

XP_042972972.1 uncharacterized protein LOC122304773 [Carya illinoinensis]2.6e-0946.07Show/hide
Query:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKK
        W  P    FKLNVDG T  N++  GIG I+R+ KGEV++A SK    + DA  +E LAI  GL++   LG Q L +ES A+ +V  L+K
Subjt:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKK

XP_042979948.1 uncharacterized protein LOC122310131 [Carya illinoinensis]2.6e-0944.94Show/hide
Query:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKK
        W  P+   FKLNVDG    N+   GIG I+R+ KGEV++A SK    + DA  +E LAI  GL++ L LG Q L +ES A+ +V  ++K
Subjt:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKK

TrEMBL top hitse value%identityAlignment
A0A2N9GPD6 RNase H domain-containing protein6.9e-0836.9Show/hide
Query:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVV
        W +P +H +K+N DG    + N GGIGV+IR+  G+V+  +S+ +FG    E +EALA R  +     +G   +EVE  A  ++
Subjt:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVV

A0A314UDF4 RNase H domain-containing protein5.3e-0843.53Show/hide
Query:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVN
        W  P     KLNVDG  +T+  K G+G ++RN  G++M AIS PI G   A+  E LAIREGL+     G+  L VE++A   +N
Subjt:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVN

A0A5B7A5C8 Uncharacterized protein2.4e-0836.84Show/hide
Query:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKKRFQDRS
        W  P    +KLN+DG+    EN GG+G +IR+WKGEV+   +KP+   V A+  +A+AI  G+     +G Q+L VE   + V++ ++   +D S
Subjt:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKKRFQDRS

A0A6P5RZ31 uncharacterized protein LOC1107515796.9e-0843.53Show/hide
Query:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVN
        W  P     KLNVDG  +T+  K G+G ++RN  G++M AIS PI G   A+  E LAIREGL+     G+  L VE+ A   +N
Subjt:  WNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVN

A0A6P5ZMN0 uncharacterized protein LOC1113024151.6e-0934.69Show/hide
Query:  KRGWNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKKRFQDRS
        K+ W  P+++++K+N DG       + GIGV+IR++K +V+ A+S+P+  + +A  VE LA+ + +E    +GF ++E+E  A+ ++ LLK    D S
Subjt:  KRGWNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKKRFQDRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATCGGAAAGCCAAAAGAGGTTGGAACATACCAAGGCATCATAATTTTAAGTTAAACGTGGATGGGACAACTAATACTAATGAAAATAAAGGTGGGATCGGCGT
AATAATAAGAAATTGGAAGGGAGAAGTCATGGTTGCCATTTCAAAACCAATTTTTGGGATAGTGGATGCAGAATTTGTGGAAGCACTTGCTATACGAGAAGGTTTAGAAA
TTGTGCTGGCGTTGGGCTTTCAAAGATTGGAAGTTGAATCTCATGCCGTACGTGTGGTGAATTTGCTTAAAAAACGGTTTCAAGATCGATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAATCGGAAAGCCAAAAGAGGTTGGAACATACCAAGGCATCATAATTTTAAGTTAAACGTGGATGGGACAACTAATACTAATGAAAATAAAGGTGGGATCGGCGT
AATAATAAGAAATTGGAAGGGAGAAGTCATGGTTGCCATTTCAAAACCAATTTTTGGGATAGTGGATGCAGAATTTGTGGAAGCACTTGCTATACGAGAAGGTTTAGAAA
TTGTGCTGGCGTTGGGCTTTCAAAGATTGGAAGTTGAATCTCATGCCGTACGTGTGGTGAATTTGCTTAAAAAACGGTTTCAAGATCGATCATAG
Protein sequenceShow/hide protein sequence
MNNRKAKRGWNIPRHHNFKLNVDGTTNTNENKGGIGVIIRNWKGEVMVAISKPIFGIVDAEFVEALAIREGLEIVLALGFQRLEVESHAVRVVNLLKKRFQDRS