; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0005824 (gene) of Chayote v1 genome

Gene IDSed0005824
OrganismSechium edule (Chayote v1)
DescriptionSWIB domain-containing protein
Genome locationLG02:4017838..4035968
RNA-Seq ExpressionSed0005824
SyntenySed0005824
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603170.1 hypothetical protein SDJN03_03779, partial [Cucurbita argyrosperma subsp. sororia]3.3e-3883Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGK ++EL ELPALI+LHFPK PK
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
TKY46953.1 Upstream activation factor subunit spp27 [Spatholobus suberectus]5.7e-3883Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP NKNVV CDEKLKSILLGKP+VEL ELPALI+LHFPK+PK
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]3.3e-3883Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGK ++EL ELPALI+LHFPK PK
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
XP_027343910.1 upstream activation factor subunit spp27 [Abrus precatorius]5.7e-3883Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP NKNVV CDEKLKSILLGKP+VEL ELPALI+LHFPK+PK
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]5.1e-3985Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGKP+VEL ELPALI+LHFPK PK
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
TrEMBL top hitse value%identityAlignment
A0A151SBL4 Upstream activation factor subunit UAF301.4e-3780Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ANLIDL+NL STL EFVGQSQISRLGCFK VWSYIKTNNLQDP NKNVV CDEKLKSILLGKP+V+L ELPALI++HFPK+PK
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
A0A1S3BL41 upstream activation factor subunit spp274.7e-3885.26Show/hide
Query:  IKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        +K A+ +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVV+CDEKLKSILLGKP+VEL ELPALI+LHFPK PK
Subjt:  IKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
A0A6J1ELR1 upstream activation factor subunit UAF301.6e-3883Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKLKSILLGK ++EL ELPALI+LHFPK PK
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
A0A6J1HWJ0 protein TRI1 isoform X12.8e-3883Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKL+SILLGK +VEL ELPALI+LHFPK PK
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
A0A6J1HY33 upstream activation factor subunit UAF30 isoform X22.8e-3883Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ANLIDLVNL STL EFVGQSQISRLGCFK VWSYIKTNNLQDPTNKNVVICDEKL+SILLGK +VEL ELPALI+LHFPK PK
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp272.2e-0848.08Show/hide
Query:  VNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSI
        + LS  L+EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Subjt:  VNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSI
Q05024 Protein TRI11.3e-0532.81Show/hide
Query:  ENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSI
        ++P   +  +  V LS+ L +F+G  ++ R    K +W YIK ++LQ+P ++  ++CDEK++ I
Subjt:  ENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSI
Q08747 Upstream activation factor subunit UAF306.4e-0837.66Show/hide
Query:  VNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHF--PKK
        V LS +L+  +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGK    + E+  ++  H   PKK
Subjt:  VNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHF--PKK
Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein3.0e-1343.06Show/hide
Query:  LSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPK
        +S  L+ F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK +V + E+  L+  HFPK
Subjt:  LSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPK
AT2G35605.1 SWIB/MDM2 domain superfamily protein8.5e-1643.59Show/hide
Query:  LIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPK
        ++ +V +S  L+ F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK  V  +E+  L+  HFPK
Subjt:  LIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPK
AT4G26810.1 SWIB/MDM2 domain superfamily protein1.9e-3979Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ NLIDLVNL STL  FVGQSQISRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGK RVELV+LP+LI+LHFPK+ K
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
AT4G26810.2 SWIB/MDM2 domain superfamily protein1.9e-3979Show/hide
Query:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
        M P  +K AI +NPKK+ NLIDLVNL STL  FVGQSQISRLGCF  VWSYIKTNNLQDP NKNVVICDEKLKSILLGK RVELV+LP+LI+LHFPK+ K
Subjt:  MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK
AT4G34290.1 SWIB/MDM2 domain superfamily protein3.3e-1245.71Show/hide
Query:  LSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHF
        +S  + + VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK RV  +E+  LI  HF
Subjt:  LSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCCAGATCTGATCAAGAATGCAATTCTGGAAAACCCTAAGAAGATTGCAAACCTAATTGATCTTGTAAACCTTTCTTCGACTCTTAGCGAGTTTGTGGGACAGTC
CCAAATTTCTCGTCTCGGCTGTTTCAAATCTGTGTGGTCATATATCAAAACCAACAATCTTCAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAGAAGTTAAAGA
GTATATTGCTAGGCAAGCCGAGGGTTGAGCTAGTCGAACTTCCTGCACTGATTCAGTTGCATTTTCCCAAAAAGCCCAAGTGA
mRNA sequenceShow/hide mRNA sequence
GAATTATTTTACCCCCTCAACAAACGAACACCTCCTTTTCCGCCGTGCTGCGCCACCGAAACCCTCACCGACGTCGTCTACTTCCACGCGCACGAGCTCCAGCAGTCGTC
ACCTTTCGCCCCGCTGAGCCGCAACACCTCCGCTCGTCAACGACACCAGTGCCACACCGTCCAAGTTCGCAAGTCGCGAGTTCGCTGCCCAGCCTCCGTTCGACAGCGCC
TCAGCAACGGCGCACTAGTCGCGCATTCCAGCGGCCCCAACACGCGCGTGGCTCGCCCCTGCTGTGCCGGCCTTGTGCAGCTGGTTCCTTGCGCCTCGTTAGTTCTTGTC
AGCCCTATTTCATTGTGTTTCGGGGTTGGGTGTTTATCGCTGATTTCTGCCGTAGTTCAAAGGTTGCTCTCAGTATCATCTTTCCGGGATTTGGCGTTTTCCATATTTTT
GTGCAGAAAAATGCGGCCAGATCTGATCAAGAATGCAATTCTGGAAAACCCTAAGAAGATTGCAAACCTAATTGATCTTGTAAACCTTTCTTCGACTCTTAGCGAGTTTG
TGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAATCTGTGTGGTCATATATCAAAACCAACAATCTTCAGGATCCGACCAACAAAAATGTGGTCATTTGTGATGAG
AAGTTAAAGAGTATATTGCTAGGCAAGCCGAGGGTTGAGCTAGTCGAACTTCCTGCACTGATTCAGTTGCATTTTCCCAAAAAGCCCAAGTGAGTTGTGTTTGCAGTTTA
ACCTCTGGCACCTCTCGAATGACGTCCTCAAGTCGCCTTTGTTTCGAATGTTTAGCCTCAATATCGTATAATTTTCCTACAGGGTTCTTTTATAGAACATTATTCAGCAA
TAGTATGAGTTTAACTATCTTCCTCATGCCTTCTGTGTAGTATTGTATTTGGTTTCACTTGATATTTTATCGTATTAATTTCTCGAGTAACTTGGAATTGATTAGAACTT
CAGGACAAAGTAGCTGCCTATCTAAGAATTAATTTATTATATTTTTTTTTTACAACCAAATGTAGTATAATCGGTTAGTTGTCTCGTG
Protein sequenceShow/hide protein sequence
MRPDLIKNAILENPKKIANLIDLVNLSSTLSEFVGQSQISRLGCFKSVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPRVELVELPALIQLHFPKKPK