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Sed0005845 (gene) of Chayote v1 genome

Gene IDSed0005845
OrganismSechium edule (Chayote v1)
DescriptionMyb_DNA-bind_3 domain-containing protein
Genome locationLG13:6856259..6858116
RNA-Seq ExpressionSed0005845
SyntenySed0005845
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]1.1e-4643.29Show/hide
Query:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFE---------------
        MLRT GGL  T Y+DVEEMV +FLHI+AHDVKN V RR F RS ETVSRHF  VL  V+R H+IL K+P+ +  SC+  +W+WF+               
Subjt:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFE---------------

Query:  -----------------------------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQT
                                     Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF WN + KCIE E +V ++WV+ 
Subjt:  -----------------------------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQT

Query:  HPNAKGLNNKPFPHYDDLAYIFGKDRACGSR
        H NA+ L NKPFP++ DL  +FG+DRA G +
Subjt:  HPNAKGLNNKPFPHYDDLAYIFGKDRACGSR

KAG6532280.1 hypothetical protein ZIOFF_006120 [Zingiber officinale]5.7e-4846.83Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHN-
        M+R  F  LC +L  H  L+G   + + E+V  FLHI+AH+VKN V++    RS ET+SR F  +L +++R H+IL KKPEPI   CTD RWKWF+  N 
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHN-

Query:  -------ELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKD
                L +L+  KLP   + +T  ID+R K LKR++ AI +ML N  SGFGWND  KCI     VF++WV+ HP   GL NK FP++DDL +++GKD
Subjt:  -------ELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKD

Query:  RACGS
         A G+
Subjt:  RACGS

TYK05796.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-4944.59Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHNE
        M+R  F  LC +L+T  GL  T+ +DVEEMVAMFLH++AHD+KN V++R F RSDETVSRHF  VL  V+R ++ L K+P P+  +C D RW+ FE    
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHNE

Query:  LLRLMYLKLPGCPITSTTVIDTRVKNLKRQY-----------------------------------QAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV
         L   Y+K+   P T      TR   +   Y                                    AI EM G  CSGFGWND+ KCI  E  +FDNWV
Subjt:  LLRLMYLKLPGCPITSTTVIDTRVKNLKRQY-----------------------------------QAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV

Query:  QTHPNAKGLNNKPFPHYDDLAYIFGKDRACG
        ++HP  KGL NKPFP+YD+L Y+FG+DRA G
Subjt:  QTHPNAKGLNNKPFPHYDDLAYIFGKDRACG

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]6.3e-4742.29Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSC-----------TD
        M+R CF  LC MLRT GGL  T Y+DV+EMV +FLHI+AHDVKN V RR   RS ETVSRHF +VL AV+R H+IL K+P+P+  SC           + 
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSC-----------TD

Query:  SRWKWFEYHNELLR--------LMYLKLPGCPITSTTVIDTRVKNLK------------------------------------RQYQAIAEMLGNTCSGF
        S    + + N  +         ++ +++       T +  T  K  K                                    +QY AIAEM+G  CSGF
Subjt:  SRWKWFEYHNELLR--------LMYLKLPGCPITSTTVIDTRVKNLK------------------------------------RQYQAIAEMLGNTCSGF

Query:  GWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR
        GWN+  KCIEVE  VFD+WV+ HPNA+GL NKPFP++ DL  +FG+DRA G R
Subjt:  GWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]1.1e-4643.29Show/hide
Query:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFE---------------
        MLRT GGL  T Y+DVEEMV +FLHI+AHDVKN V RR F RS ETVSRHF  VL  V+R H+IL K+P+ +  SC+  +W+WF+               
Subjt:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFE---------------

Query:  -----------------------------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQT
                                     Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF WN + KCIE E +V ++WV+ 
Subjt:  -----------------------------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQT

Query:  HPNAKGLNNKPFPHYDDLAYIFGKDRACGSR
        H NA+ L NKPFP++ DL  +FG+DRA G +
Subjt:  HPNAKGLNNKPFPHYDDLAYIFGKDRACGSR

TrEMBL top hitse value%identityAlignment
A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein5.2e-4743.29Show/hide
Query:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFE---------------
        MLRT GGL  T Y+DVEEMV +FLHI+AHDVKN V RR F RS ETVSRHF  VL  V+R H+IL K+P+ +  SC+  +W+WF+               
Subjt:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFE---------------

Query:  -----------------------------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQT
                                     Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF WN + KCIE E +V ++WV+ 
Subjt:  -----------------------------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQT

Query:  HPNAKGLNNKPFPHYDDLAYIFGKDRACGSR
        H NA+ L NKPFP++ DL  +FG+DRA G +
Subjt:  HPNAKGLNNKPFPHYDDLAYIFGKDRACGSR

A0A5D3BSX2 Putative nuclease HARBI12.0e-4333.24Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYH--
        M+R CF  L  +LRT  GL     +DVEEMV MFLHI+AHDVKN +++R F RS ET+S HF  VL A+IR HD L KKP+ +   C D RW+WFE H  
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYH--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------NELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYK
                                                      N+L R+M  K+ G  + ++T ID+R+K LKR + AIAEM   TCSGF WND+ K
Subjt:  ----------------------------------------------NELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYK

Query:  CIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR
        CI  E  VFDNWV  HP AKGL NK FPHYD+L+Y+FGKDRA G R
Subjt:  CIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR

A0A5D3C620 Retrotransposon protein3.3e-4944.59Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHNE
        M+R  F  LC +L+T  GL  T+ +DVEEMVAMFLH++AHD+KN V++R F RSDETVSRHF  VL  V+R ++ L K+P P+  +C D RW+ FE    
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHNE

Query:  LLRLMYLKLPGCPITSTTVIDTRVKNLKRQY-----------------------------------QAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV
         L   Y+K+   P T      TR   +   Y                                    AI EM G  CSGFGWND+ KCI  E  +FDNWV
Subjt:  LLRLMYLKLPGCPITSTTVIDTRVKNLKRQY-----------------------------------QAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWV

Query:  QTHPNAKGLNNKPFPHYDDLAYIFGKDRACG
        ++HP  KGL NKPFP+YD+L Y+FG+DRA G
Subjt:  QTHPNAKGLNNKPFPHYDDLAYIFGKDRACG

A0A5D3C7T4 Uncharacterized protein3.0e-4742.29Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSC-----------TD
        M+R CF  LC MLRT GGL  T Y+DV+EMV +FLHI+AHDVKN V RR   RS ETVSRHF +VL AV+R H+IL K+P+P+  SC           + 
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSC-----------TD

Query:  SRWKWFEYHNELLR--------LMYLKLPGCPITSTTVIDTRVKNLK------------------------------------RQYQAIAEMLGNTCSGF
        S    + + N  +         ++ +++       T +  T  K  K                                    +QY AIAEM+G  CSGF
Subjt:  SRWKWFEYHNELLR--------LMYLKLPGCPITSTTVIDTRVKNLK------------------------------------RQYQAIAEMLGNTCSGF

Query:  GWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR
        GWN+  KCIEVE  VFD+WV+ HPNA+GL NKPFP++ DL  +FG+DRA G R
Subjt:  GWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSR

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein5.2e-4743.29Show/hide
Query:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFE---------------
        MLRT GGL  T Y+DVEEMV +FLHI+AHDVKN V RR F RS ETVSRHF  VL  V+R H+IL K+P+ +  SC+  +W+WF+               
Subjt:  MLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFE---------------

Query:  -----------------------------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQT
                                     Y  ++ +LM  K+    I  T  +++ VK LK+QY  IAEM+G  CSGF WN + KCIE E +V ++WV+ 
Subjt:  -----------------------------YHNELLRLMYLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQT

Query:  HPNAKGLNNKPFPHYDDLAYIFGKDRACGSR
        H NA+ L NKPFP++ DL  +FG+DRA G +
Subjt:  HPNAKGLNNKPFPHYDDLAYIFGKDRACGSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein3.8e-1040.95Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTA--VIRCHDI-------LFKKPEPIQPSCTDSR
        M+  CF TLC+ML+T+  L+ T  I +EE VAMFL I  H+     V   F R+ ETV R F+ VLTA  ++ C  I       L++ PE +Q    D R
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTA--VIRCHDI-------LFKKPEPIQPSCTDSR

Query:  -WKWF
         W +F
Subjt:  -WKWF

AT2G24960.2 unknown protein2.1e-0832.53Show/hide
Query:  VIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSRYCR
        V+  R K+L+R Y  I  +L    +GF W+ +   +  +  +++ ++Q HP A+    K  P Y +L +IFGK+ + G RY R
Subjt:  VIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSRYCR

AT4G02210.1 unknown protein4.9e-0525.35Show/hide
Query:  VIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIF
        V+  R K L+  ++++  +L     GF W+D  + +  +  V+D +++ HP+++    K  P Y DL  ++
Subjt:  VIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIF

AT4G02210.2 unknown protein4.9e-0525.35Show/hide
Query:  VIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIF
        V+  R K L+  ++++  +L     GF W+D  + +  +  V+D +++ HP+++    K  P Y DL  ++
Subjt:  VIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIF

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)5.4e-1245.71Show/hide
Query:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVI
        M++  F  LCD+L+T G LR T+ I +E  +A+FL I+ H+++   V+ +F  S ET+SRHF +VL AVI
Subjt:  MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGTAGCTGCTTTGAAACATTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATAT
CATGGCTCATGATGTTAAGAACCATGTCGTTCGAAGAATATTTACAAGATCCGATGAAACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTTATTCGTTGTCATG
ACATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGACAGTAGATGGAAGTGGTTTGAGTACCATAATGAACTACTTCGACTAATGTACCTAAAACTACCT
GGATGCCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTTGGCTG
GAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGGTTCAAACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATG
ACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGTAGCTGCTTTGAAACATTGTGCGACATGCTAAGGACCCACGGTGGTCTTCGAGGTACGGATTACATCGACGTGGAGGAAATGGTAGCCATGTTTCTACATAT
CATGGCTCATGATGTTAAGAACCATGTCGTTCGAAGAATATTTACAAGATCCGATGAAACAGTGTCGCGACACTTTCAATCTGTCCTTACTGCTGTTATTCGTTGTCATG
ACATTTTGTTCAAGAAACCTGAACCTATCCAACCATCATGCACCGACAGTAGATGGAAGTGGTTTGAGTACCATAATGAACTACTTCGACTAATGTACCTAAAACTACCT
GGATGCCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTTGGCTG
GAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGGTTCAAACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATG
ACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGA
Protein sequenceShow/hide protein sequence
MNRSCFETLCDMLRTHGGLRGTDYIDVEEMVAMFLHIMAHDVKNHVVRRIFTRSDETVSRHFQSVLTAVIRCHDILFKKPEPIQPSCTDSRWKWFEYHNELLRLMYLKLP
GCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWVQTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSRYCRRRFECRGR