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Sed0005846 (gene) of Chayote v1 genome

Gene IDSed0005846
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG02:30329323..30329736
RNA-Seq ExpressionSed0005846
SyntenySed0005846
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR005135 - Endonuclease/exonuclease/phosphatase
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.8e-2545.04Show/hide
Query:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR
        +G  +WLS +YGP+     P FWEEL  L   C   W++ GDFN IRW  E ++  PA   M+ FNSFI + NLID PL+N  YTW + R   TLS+LDR
Subjt:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR

Query:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL
         L T  +   F     + + R TSDH+P++L
Subjt:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL

KAA0044449.1 hypothetical protein E6C27_scaffold46G001820 [Cucumis melo var. makuwa]2.6e-2545.04Show/hide
Query:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR
        +G  +WLS +YGP+     P FWEEL  L   C   W++ GDFN IRW  E S+  PA+  MK FN+FI + NLID PLTN  +TW + R   TLS+LDR
Subjt:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR

Query:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL
         L +  +   F     + + R TSDH+P++L
Subjt:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.0e-2545.04Show/hide
Query:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR
        +G  +WLS +YGP+     P FWEEL  L   C   W++ GDFN IRW  E S+  PA+  MK FN+FI + NLID PLTN  +TW + R   TLS+LDR
Subjt:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR

Query:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL
         L +  +   F     + + R TSDH+P++L
Subjt:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL

TYK29577.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.6e-2545.04Show/hide
Query:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR
        +G  +WLS +YGP+     P FWEEL  L   C   W++ GDFN IRW  E S+  PA+  MK FN+FI + NLID PLTN  +TW + R   TLS+LDR
Subjt:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR

Query:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL
         L +  +   F     + + R TSDH+P++L
Subjt:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]3.4e-2542.34Show/hide
Query:  MADGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKL
        ++DG+ +W+SG+YGPSTT+    FW+EL  L+  C ++W++ GDFN  RW+ E+S+  P T  M  FNSFI  ++LID+PLTNG +TW       + S +
Subjt:  MADGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKL

Query:  DRNLVTQDFMGHFLELHGRRIERHTSDHYPLLLSIGK
        D  L+T   +        +R+ R TSDH+P+LL  G+
Subjt:  DRNLVTQDFMGHFLELHGRRIERHTSDHYPLLLSIGK

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein2.8e-2545.04Show/hide
Query:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR
        +G  +WLS +YGP+     P FWEEL  L   C   W++ GDFN IRW  E ++  PA   M+ FNSFI + NLID PL+N  YTW + R   TLS+LDR
Subjt:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR

Query:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL
         L T  +   F     + + R TSDH+P++L
Subjt:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL

A0A5A7TTA1 DUF4283 domain-containing protein1.3e-2545.04Show/hide
Query:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR
        +G  +WLS +YGP+     P FWEEL  L   C   W++ GDFN IRW  E S+  PA+  MK FN+FI + NLID PLTN  +TW + R   TLS+LDR
Subjt:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR

Query:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL
         L +  +   F     + + R TSDH+P++L
Subjt:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein9.6e-2645.04Show/hide
Query:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR
        +G  +WLS +YGP+     P FWEEL  L   C   W++ GDFN IRW  E S+  PA+  MK FN+FI + NLID PLTN  +TW + R   TLS+LDR
Subjt:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR

Query:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL
         L +  +   F     + + R TSDH+P++L
Subjt:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL

A0A5D3E0F6 LINE-1 retrotransposable element ORF2 protein1.3e-2545.04Show/hide
Query:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR
        +G  +WLS +YGP+     P FWEEL  L   C   W++ GDFN IRW  E S+  PA+  MK FN+FI + NLID PLTN  +TW + R   TLS+LDR
Subjt:  DGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDR

Query:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL
         L +  +   F     + + R TSDH+P++L
Subjt:  NLVTQDFMGHFLELHGRRIERHTSDHYPLLL

A0A6J1E2G6 uncharacterized protein LOC1110254051.6e-2542.34Show/hide
Query:  MADGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKL
        ++DG+ +W+SG+YGPSTT+    FW+EL  L+  C ++W++ GDFN  RW+ E+S+  P T  M  FNSFI  ++LID+PLTNG +TW       + S +
Subjt:  MADGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKL

Query:  DRNLVTQDFMGHFLELHGRRIERHTSDHYPLLLSIGK
        D  L+T   +        +R+ R TSDH+P+LL  G+
Subjt:  DRNLVTQDFMGHFLELHGRRIERHTSDHYPLLLSIGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATGGATATAGATATTGGCTATCTGGTGTATATGGCCCATCGACGACAGACCCTTCTCCCGACTTTTGGGAAGAGCTCAGTAAGCTTGCGGTTGAATGTGGAAG
CAATTGGGTTATTTGTGGTGATTTTAATGCTATTAGATGGGCACATGAAAGATCTAGTAATGGTCCTGCCACGCCTGACATGAAGAGTTTTAACTCTTTCATTAGGTCCA
CTAATCTCATTGATCTCCCCCTCACTAATGGTATCTACACTTGGTTTGATTATAGAACTCCTCCTACTTTGTCCAAACTGGATAGAAACCTTGTTACACAGGATTTTATG
GGCCATTTTTTGGAGCTTCATGGCAGAAGAATAGAACGACACACCTCTGATCATTATCCTCTATTACTCTCCATTGGCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATGGATATAGATATTGGCTATCTGGTGTATATGGCCCATCGACGACAGACCCTTCTCCCGACTTTTGGGAAGAGCTCAGTAAGCTTGCGGTTGAATGTGGAAG
CAATTGGGTTATTTGTGGTGATTTTAATGCTATTAGATGGGCACATGAAAGATCTAGTAATGGTCCTGCCACGCCTGACATGAAGAGTTTTAACTCTTTCATTAGGTCCA
CTAATCTCATTGATCTCCCCCTCACTAATGGTATCTACACTTGGTTTGATTATAGAACTCCTCCTACTTTGTCCAAACTGGATAGAAACCTTGTTACACAGGATTTTATG
GGCCATTTTTTGGAGCTTCATGGCAGAAGAATAGAACGACACACCTCTGATCATTATCCTCTATTACTCTCCATTGGCAAATAG
Protein sequenceShow/hide protein sequence
MADGYRYWLSGVYGPSTTDPSPDFWEELSKLAVECGSNWVICGDFNAIRWAHERSSNGPATPDMKSFNSFIRSTNLIDLPLTNGIYTWFDYRTPPTLSKLDRNLVTQDFM
GHFLELHGRRIERHTSDHYPLLLSIGK