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Sed0005847 (gene) of Chayote v1 genome

Gene IDSed0005847
OrganismSechium edule (Chayote v1)
DescriptionPaired amphipathic helix protein
Genome locationLG01:69380063..69380413
RNA-Seq ExpressionSed0005847
SyntenySed0005847
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0043229 - intracellular organelle (cellular component)
InterPro domainsIPR003822 - Paired amphipathic helix
IPR036600 - Paired amphipathic helix superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2623456.1 auxin response factor 1 [Pyrus ussuriensis x Pyrus communis]9.6e-0539.47Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        T   +  Y+ +V+E F  + +I  Y+ F+QLL D +   T+T+A     LT  +  LF+ HPHL+ GFN FLP+E+
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

RXH92200.1 hypothetical protein DVH24_033096 [Malus domestica]9.6e-0539.47Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        T   +  Y+ +V+E F  + +I  ++ F+QLL D +   T+TDA     LT  +  LF+ HPHL+ GFN FLP+E+
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

TQD69878.1 hypothetical protein C1H46_044590 [Malus baccata]9.6e-0539.47Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        T   +  Y+ +V+E F  + +I  ++ F+QLL D +   T+TDA     LT  +  LF+ HPHL+ GFN FLP+E+
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

XP_008357687.2 paired amphipathic helix protein Sin3-like 3 [Malus domestica]7.4e-0539.47Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        T + +  Y+ +V+E F  + +I  ++ F+QLL D +   T+TDA     LT  +  LF+ HPHL+ GFN FLP+E+
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

XP_022021413.1 paired amphipathic helix protein Sin3-like 1 [Helianthus annuus]9.6e-0537.63Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFDPDVATTSGRTDDDSE
        TTD A  Y+ +V+E F+   Q  KY EFL  + D +       +  + +T RL +LF+ H H I+GFN FLPQ Y    ++  T    DDD +
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFDPDVATTSGRTDDDSE

TrEMBL top hitse value%identityAlignment
A0A072VQC1 Paired amphipathic helix protein6.1e-0543.21Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKP---DTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFD
        T +AA  YV  V++ F+ E  I KY+EFL ++ D K    DTN        + ARL DLF+ H +LI GFN+F+P+   FD
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKP---DTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFD

A0A251RP26 Putative paired amphipathic helix4.7e-0537.63Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFDPDVATTSGRTDDDSE
        TTD A  Y+ +V+E F+   Q  KY EFL  + D +       +  + +T RL +LF+ H H I+GFN FLPQ Y    ++  T    DDD +
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFDPDVATTSGRTDDDSE

A0A498J9N6 Auxin-responsive protein4.7e-0539.47Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        T   +  Y+ +V+E F  + +I  ++ F+QLL D +   T+TDA     LT  +  LF+ HPHL+ GFN FLP+E+
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

A0A540K6N2 HDAC_interact domain-containing protein4.7e-0539.47Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        T   +  Y+ +V+E F  + +I  ++ F+QLL D +   T+TDA     LT  +  LF+ HPHL+ GFN FLP+E+
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

A0A5N5H664 Auxin-responsive protein4.7e-0539.47Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        T   +  Y+ +V+E F  + +I  Y+ F+QLL D +   T+T+A     LT  +  LF+ HPHL+ GFN FLP+E+
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

SwissProt top hitse value%identityAlignment
Q9LFQ3 Paired amphipathic helix protein Sin3-like 23.4e-0535.24Show/hide
Query:  KGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFD-PDVATTSGRT
        +G I T+ + TTD A  Y+ +V+E F  + Q  KY+ FL+++ D K   T+T       + +R+ +LF+ H +LI GFN FLP+ +     DV   S +T
Subjt:  KGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFD-PDVATTSGRT

Query:  DDDSE
         +  E
Subjt:  DDDSE

Q9SRH9 Paired amphipathic helix protein Sin3-like 12.6e-0534.83Show/hide
Query:  KKQKGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        +++ G+     + TT+ A  Y+ +V+E F  + Q  KY+ FL+++ D K   T+T       + AR+ +LF+ H +LI GFN FLP+ Y
Subjt:  KKQKGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

Arabidopsis top hitse value%identityAlignment
AT1G24200.1 Paired amphipathic helix (PAH2) superfamily protein1.1e-0635.9Show/hide
Query:  HESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        H+ TT+ A +Y+  V+  F  +GQ  KY+EFLQ+++D K    T  +    +  R+ +L +    L+ GFN FLP  Y
Subjt:  HESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

AT1G24230.1 Paired amphipathic helix (PAH2) superfamily protein6.4e-0737.84Show/hide
Query:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQE
        T D AT Y+N V+E F G  Q +KY EFL +++DL+     + +    +  R+ +L + H +L+  FN FLP E
Subjt:  TTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQE

AT3G01320.1 SIN3-like 11.9e-0634.83Show/hide
Query:  KKQKGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        +++ G+     + TT+ A  Y+ +V+E F  + Q  KY+ FL+++ D K   T+T       + AR+ +LF+ H +LI GFN FLP+ Y
Subjt:  KKQKGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

AT3G01320.2 SIN3-like 11.9e-0634.83Show/hide
Query:  KKQKGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY
        +++ G+     + TT+ A  Y+ +V+E F  + Q  KY+ FL+++ D K   T+T       + AR+ +LF+ H +LI GFN FLP+ Y
Subjt:  KKQKGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEY

AT5G15020.1 SIN3-like 22.4e-0635.24Show/hide
Query:  KGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFD-PDVATTSGRT
        +G I T+ + TTD A  Y+ +V+E F  + Q  KY+ FL+++ D K   T+T       + +R+ +LF+ H +LI GFN FLP+ +     DV   S +T
Subjt:  KGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPD-TNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFD-PDVATTSGRT

Query:  DDDSE
         +  E
Subjt:  DDDSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCGTGGTCGCAAGGCAAAGAAGCAGAAAGGGGCAATCGAAACCGAGCACGAATCAACTACGGACGCGGCGACTGAATATGTGAACAAAGTAGAGGAGACCTTTAA
AGGCGAAGGCCAGATTTCTAAGTACAACGAGTTCCTTCAACTTCTCGTCGATCTCAAACCCGATACCAATACCGATGCCATGCCTTATCACCATCTCACTGCAAGACTCA
ACGACTTGTTTCGATTACATCCGCACCTCATTGCCGGTTTCAATGTGTTCTTGCCTCAAGAGTATCACTTCGATCCCGACGTTGCTACTACTTCGGGAAGAACCGATGAT
GACTCTGAGCATTTTAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCGTGGTCGCAAGGCAAAGAAGCAGAAAGGGGCAATCGAAACCGAGCACGAATCAACTACGGACGCGGCGACTGAATATGTGAACAAAGTAGAGGAGACCTTTAA
AGGCGAAGGCCAGATTTCTAAGTACAACGAGTTCCTTCAACTTCTCGTCGATCTCAAACCCGATACCAATACCGATGCCATGCCTTATCACCATCTCACTGCAAGACTCA
ACGACTTGTTTCGATTACATCCGCACCTCATTGCCGGTTTCAATGTGTTCTTGCCTCAAGAGTATCACTTCGATCCCGACGTTGCTACTACTTCGGGAAGAACCGATGAT
GACTCTGAGCATTTTAGGTGA
Protein sequenceShow/hide protein sequence
MGRGRKAKKQKGAIETEHESTTDAATEYVNKVEETFKGEGQISKYNEFLQLLVDLKPDTNTDAMPYHHLTARLNDLFRLHPHLIAGFNVFLPQEYHFDPDVATTSGRTDD
DSEHFR