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Sed0005863 (gene) of Chayote v1 genome

Gene IDSed0005863
OrganismSechium edule (Chayote v1)
DescriptionSarcosine dehydrogenase-2C mitochondrial
Genome locationLG13:157194..158094
RNA-Seq ExpressionSed0005863
SyntenySed0005863
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576620.1 hypothetical protein SDJN03_24194, partial [Cucurbita argyrosperma subsp. sororia]2.0e-3860.58Show/hide
Query:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC
        KR+RL    + + +  + EED+ PLRP+ C+K N NK+DL+RFD  E+CY+LDFDPFH    +NQ L   ++ +S+SD+SLVAEKGQ+ACRDYPHARYLC
Subjt:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC

Query:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGA
        L FPF  TP  TYC MCYCYVCDA APC HW  HC A
Subjt:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGA

XP_022140919.1 uncharacterized protein LOC111011466 [Momordica charantia]8.2e-4059.69Show/hide
Query:  EDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCPMCYC
        E +SPLR I C+   KN VDL+RFD+ EDCYVLDFDPFH P       +   + +++S++S+V EKGQ+ACRDYPHARYLC+KFPFD TP  + C MC+C
Subjt:  EDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCPMCYC

Query:  YVCDAKAPCAHWMIHCGASHTNPIWRQLR
        YVCD++APC HW  HC ASHTNP+W   R
Subjt:  YVCDAKAPCAHWMIHCGASHTNPIWRQLR

XP_022922610.1 uncharacterized protein LOC111430566 [Cucurbita moschata]1.4e-3957.33Show/hide
Query:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC
        KR+RL    + + +  + EED+ PLRP+ C+K N NK+DL+RFD  E+CY+LDFDPFH    +NQ L+  ++ +S+SD+SLVAEKGQ+ACRDYPHARYLC
Subjt:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC

Query:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLRTD
        LKFPF  TP  TYC MCYCYVCDA APC HW  HC A   +   R+  +D
Subjt:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLRTD

XP_022984372.1 uncharacterized protein LOC111482692 [Cucurbita maxima]5.3e-3957.43Show/hide
Query:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC
        K++RL    + +    + EEDN PLRPI C+K N NK+DL+RFD  + CY+LDFDPFH    +NQ L   ++ +S+SD+SLVAEKGQ+ACRDYPHARYLC
Subjt:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC

Query:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLR
        LK PF  TP  TYC MCYCYVCDA APC HW  HC   H + +W++ R
Subjt:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLR

XP_023552151.1 uncharacterized protein LOC111809913 [Cucurbita pepo subsp. pepo]9.7e-4158.78Show/hide
Query:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC
        KR+RL    + + +  + EED+ PLRPI C+KN  NK+DL+RFD TE+CY+LDF+PFH    +NQ L+   + +S+SD+SLVAEKGQ+ACRDYPHARYLC
Subjt:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC

Query:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLR
        LKFPF  TP  TYC MCYCYVCDA APC HW  HC   H +  W++ R
Subjt:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLR

TrEMBL top hitse value%identityAlignment
A0A1Q3BZ79 Uncharacterized protein2.9e-3551.08Show/hide
Query:  EDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPP--LHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYC
        + E + SP+RPIFCLK N    D++RF+QTEDC++LDFDPF      +++   +  N  + + D+S++ EKG++ACRDYPH+R+LCLKFPFD TP H +C
Subjt:  EDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPP--LHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYC

Query:  PMCYCYVCDAKAPCAHWMI--HCGASHTNPIWRQLRTDL
         +CYCYVCD+ APC +W I  HC AS    +W+ LR +L
Subjt:  PMCYCYVCDAKAPCAHWMI--HCGASHTNPIWRQLRTDL

A0A6J1AYQ8 uncharacterized protein LOC1104224973.8e-3550.36Show/hide
Query:  WKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFD
        W ++ +++ +++EED SPLRPIFCLK N   +D++R ++ EDC++LDF+PF     I+  +    N   + D+S+V EKGQLACRDYPH+R+LCL+FPFD
Subjt:  WKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFD

Query:  KTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWR
         TP   +C +CYCYVCD+ APC +WM HC AS     W+
Subjt:  KTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWR

A0A6J1CH43 uncharacterized protein LOC1110114664.0e-4059.69Show/hide
Query:  EDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCPMCYC
        E +SPLR I C+   KN VDL+RFD+ EDCYVLDFDPFH P       +   + +++S++S+V EKGQ+ACRDYPHARYLC+KFPFD TP  + C MC+C
Subjt:  EDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCPMCYC

Query:  YVCDAKAPCAHWMIHCGASHTNPIWRQLR
        YVCD++APC HW  HC ASHTNP+W   R
Subjt:  YVCDAKAPCAHWMIHCGASHTNPIWRQLR

A0A6J1E9A2 uncharacterized protein LOC1114305666.8e-4057.33Show/hide
Query:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC
        KR+RL    + + +  + EED+ PLRP+ C+K N NK+DL+RFD  E+CY+LDFDPFH    +NQ L+  ++ +S+SD+SLVAEKGQ+ACRDYPHARYLC
Subjt:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC

Query:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLRTD
        LKFPF  TP  TYC MCYCYVCDA APC HW  HC A   +   R+  +D
Subjt:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLRTD

A0A6J1J202 uncharacterized protein LOC1114826922.6e-3957.43Show/hide
Query:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC
        K++RL    + +    + EEDN PLRPI C+K N NK+DL+RFD  + CY+LDFDPFH    +NQ L   ++ +S+SD+SLVAEKGQ+ACRDYPHARYLC
Subjt:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC

Query:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLR
        LK PF  TP  TYC MCYCYVCDA APC HW  HC   H + +W++ R
Subjt:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G20310.1 RPM1 interacting protein 131.0e-1935.96Show/hide
Query:  ERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMI------H
        +  +  +DC +LD DP         +     + + + D+ +V +KG++ACRD+PH R+ C K+ F+ T    YC MC+CYVCD +APC +W I      H
Subjt:  ERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMI------H

Query:  CGASHTNPIWRQLR
        C A+    IW+  R
Subjt:  CGASHTNPIWRQLR

AT4G27660.1 unknown protein1.8e-2942.6Show/hide
Query:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC
        K+K    +R    + +E+EE+ +PLR IFCLK  +   D++ F++ EDC++LDFDP        +KL+       + D+++V EKGQ+ACRD+PH R+LC
Subjt:  KRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLC

Query:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMI-----HCGA---SHTNPIWRQLRTDLSLAHARHHTR
        LKFPF+ +   ++C  CYCYVCD  APCA+W       HC A   S   PI R+L  DL  A  R  T+
Subjt:  LKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMI-----HCGA---SHTNPIWRQLRTDLSLAHARHHTR

AT4G28690.1 BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 13 (TAIR:AT2G20310.1)1.7e-1932.05Show/hide
Query:  EAKEDEEDNSP------LRPIFCLKNNKNKV--------DLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYL
        +   DE+D+ P      L  I  + + K  +         +E  D  +DC +LDFDP      I               + +V +KG++ACRD+PH R+ 
Subjt:  EAKEDEEDNSP------LRPIFCLKNNKNKV--------DLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYL

Query:  CLKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMI-------HCGASHTNPIWRQLR
        C K+PF  T   T+C MC+CYVCD +APC +W         HC A+     W   R
Subjt:  CLKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMI-------HCGASHTNPIWRQLR

AT5G54148.1 unknown protein7.9e-2540.88Show/hide
Query:  KEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCP
        ++ EED++PL  IFCLK  +   D++RF++TEDC++LDFDPF                  + D+  +     +   DYPH R+ CL FPF  TP  ++C 
Subjt:  KEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCP

Query:  MCYCYVCDAKAPCAHWMI---HCGASHTNPIWRQLRT
        +CYCYVCD  APCA W I   HC A + + +W   RT
Subjt:  MCYCYVCDAKAPCAHWMI---HCGASHTNPIWRQLRT

AT5G54150.1 unknown protein6.9e-2948.76Show/hide
Query:  EEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCPMCY
        EE+ SPLR I C+K  +   D++RF++TEDC++LDF+PF       ++L+     + + D+ ++ E GQ+ACRDYPH R+LCL FPF  T   T+C +CY
Subjt:  EEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPHARYLCLKFPFDKTPIHTYCPMCY

Query:  CYVCDAKAPCAHWM-IHCGAS
        C+VCD  APCA WM  HC AS
Subjt:  CYVCDAKAPCAHWM-IHCGAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACGACGAGAACGACGGCTGGAGAGAGGAAAGAATGGTGAAGCGGAAGCGTTTGGATTGGAAGAGAGATGGAAGAAAAGAAGCAAAAGAAGACGAAGAAGACAA
CAGTCCCCTCCGACCCATTTTCTGCCTGAAAAATAATAAGAACAAAGTGGATTTGGAGCGTTTCGACCAGACCGAGGACTGTTACGTTCTGGACTTTGATCCCTTTCATC
CCCCCCTCCATATTAATCAAAAACTCAATCTTCCCAATAATCCCAACTCTAATTCTGATATCTCCCTTGTGGCTGAAAAGGGTCAGTTGGCCTGTAGGGACTACCCACAC
GCCCGATATCTGTGTCTCAAATTTCCATTCGACAAAACGCCTATCCACACTTACTGTCCCATGTGTTACTGTTATGTGTGTGATGCCAAAGCTCCATGCGCCCACTGGAT
GATACACTGCGGTGCTTCACATACGAACCCGATTTGGAGGCAGCTAAGGACCGACCTCTCTCTTGCTCATGCCAGGCACCACACCAGATGA
mRNA sequenceShow/hide mRNA sequence
GAGTTTTGGGCTGGGCTTCAGGCCCATATAGAAGGGGGGAAAAAACGGAAGAGAAATAGATTTGGATTTTGAATTTTGAACATGCTGTGAAGGAAGAGGGCTATAAATGG
AAAACGACGAGAACGACGGCTGGAGAGAGGAAAGAATGGTGAAGCGGAAGCGTTTGGATTGGAAGAGAGATGGAAGAAAAGAAGCAAAAGAAGACGAAGAAGACAACAGT
CCCCTCCGACCCATTTTCTGCCTGAAAAATAATAAGAACAAAGTGGATTTGGAGCGTTTCGACCAGACCGAGGACTGTTACGTTCTGGACTTTGATCCCTTTCATCCCCC
CCTCCATATTAATCAAAAACTCAATCTTCCCAATAATCCCAACTCTAATTCTGATATCTCCCTTGTGGCTGAAAAGGGTCAGTTGGCCTGTAGGGACTACCCACACGCCC
GATATCTGTGTCTCAAATTTCCATTCGACAAAACGCCTATCCACACTTACTGTCCCATGTGTTACTGTTATGTGTGTGATGCCAAAGCTCCATGCGCCCACTGGATGATA
CACTGCGGTGCTTCACATACGAACCCGATTTGGAGGCAGCTAAGGACCGACCTCTCTCTTGCTCATGCCAGGCACCACACCAGATGAATTTTGCATCATTTGTACCCACC
CATTCATTTGTAAATGCATGATTTCCATGCTCATTCTTTTTCTTTTTGGTTCAAACCTCTCATTCAGTAATCATCTGAATTGCACTTCC
Protein sequenceShow/hide protein sequence
MENDENDGWREERMVKRKRLDWKRDGRKEAKEDEEDNSPLRPIFCLKNNKNKVDLERFDQTEDCYVLDFDPFHPPLHINQKLNLPNNPNSNSDISLVAEKGQLACRDYPH
ARYLCLKFPFDKTPIHTYCPMCYCYVCDAKAPCAHWMIHCGASHTNPIWRQLRTDLSLAHARHHTR