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Sed0005886 (gene) of Chayote v1 genome

Gene IDSed0005886
OrganismSechium edule (Chayote v1)
Description60S acidic ribosomal protein P3
Genome locationLG03:45028311..45029862
RNA-Seq ExpressionSed0005886
SyntenySed0005886
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0022626 - cytosolic ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR044252 - 60S acidic ribosomal protein P3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148320.1 60S acidic ribosomal protein P3-2 [Cucumis sativus]1.2e-4588.43Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTFVCRSSGG WTA Q SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+I+P+SAVFQVI+GGGSGGGF +GGGAAAAPAGGAAPAAAEAPA
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLFD
        EKKEEVKEESDDEDLGLSLFD
Subjt:  EKKEEVKEESDDEDLGLSLFD

XP_008451467.1 PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo]2.9e-4488.43Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTFVCRSSGG WTA Q SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+I+PTSAVFQVI+GGG GGGFI GGGAAAAPAGG APAAAEAPA
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLFD
        EKKEEVKEESDDEDLGLSLFD
Subjt:  EKKEEVKEESDDEDLGLSLFD

XP_022153281.1 60S acidic ribosomal protein P3-2 [Momordica charantia]9.3e-4389.34Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGG-AAAAPAGGAAPAAAEAP
        MGVFTFVCRSSG +WTAKQ SGDLEGSAASTYELQR LVQTAL+ DSSG VQSSFSYISPTSAVFQVIIGGG GGGFISGGG AAAAP+GGAAP AAEAP
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGG-AAAAPAGGAAPAAAEAP

Query:  AEKKEEVKEESDDEDLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEVKEESDDEDLGLSLFD

XP_022929782.1 60S acidic ribosomal protein P3-2-like [Cucurbita moschata]2.4e-4384.3Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTF+CRSSGG WTA Q SGDLEGSA STY+LQR LVQ  LS D SG VQSSFSY++PTSAVFQVIIGG SGGGFI GGGAAAAPAGG APAAAEAPA
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLFD
        EKKEEVKEESDD+DLG SLFD
Subjt:  EKKEEVKEESDDEDLGLSLFD

XP_038889531.1 60S acidic ribosomal protein P3-2 [Benincasa hispida]3.8e-4487.7Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFI-SGGGAAAAPAGGAAPAAAEAP
        MGVFTFVCRSSGG WTA Q SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+I+PTSAVFQVI+GGG GGGFI  GGGAAAAPAGG APAAAEAP
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFI-SGGGAAAAPAGGAAPAAAEAP

Query:  AEKKEEVKEESDDEDLGLSLFD
        AEKKEEVKEESDDEDLGLSLFD
Subjt:  AEKKEEVKEESDDEDLGLSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0LJB2 Uncharacterized protein5.7e-4688.43Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTFVCRSSGG WTA Q SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+I+P+SAVFQVI+GGGSGGGF +GGGAAAAPAGGAAPAAAEAPA
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLFD
        EKKEEVKEESDDEDLGLSLFD
Subjt:  EKKEEVKEESDDEDLGLSLFD

A0A1S3BRK9 60S acidic ribosomal protein P3-21.4e-4488.43Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTFVCRSSGG WTA Q SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+I+PTSAVFQVI+GGG GGGFI GGGAAAAPAGG APAAAEAPA
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLFD
        EKKEEVKEESDDEDLGLSLFD
Subjt:  EKKEEVKEESDDEDLGLSLFD

A0A5D3BNN6 60S acidic ribosomal protein P3-21.4e-4488.43Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTFVCRSSGG WTA Q SGDLEGSA STYELQR LVQ+ALS DSSG VQSSFS+I+PTSAVFQVI+GGG GGGFI GGGAAAAPAGG APAAAEAPA
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLFD
        EKKEEVKEESDDEDLGLSLFD
Subjt:  EKKEEVKEESDDEDLGLSLFD

A0A6J1ENN1 60S acidic ribosomal protein P3-2-like1.2e-4384.3Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTF+CRSSGG WTA Q SGDLEGSA STY+LQR LVQ  LS D SG VQSSFSY++PTSAVFQVIIGG SGGGFI GGGAAAAPAGG APAAAEAPA
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLFD
        EKKEEVKEESDD+DLG SLFD
Subjt:  EKKEEVKEESDDEDLGLSLFD

A0A6J1KB28 60S acidic ribosomal protein P3-2-like1.2e-4384.3Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTF+CRSSGG WTA Q SGDLEGSA STY+LQR LVQ  LS D SG VQSSFSY++PTSAVFQVIIGG SGGGFI GGGAAAAPAGG APAAAEAPA
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLFD
        EKKEEVKEESDD+DLG SLFD
Subjt:  EKKEEVKEESDDEDLGLSLFD

SwissProt top hitse value%identityAlignment
O24413 60S acidic ribosomal protein P31.5e-2759.84Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGG-GSGGGFISGGGAAAAPAGGAAPAAAEAP
        MGV+TFVCR++GG+WTAKQ SG++E SAA+ YELQR LV  A +ADS   VQSSFS ++P+SAVFQVI+G  G G   +SGGG   A A G   AAAEAP
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGG-GSGGGFISGGGAAAAPAGGAAPAAAEAP

Query:  AEKKEEVKEESDDEDLGLSLFD
         E+K+E ++E  D+D+G SLFD
Subjt:  AEKKEEVKEESDDEDLGLSLFD

P52855 60S acidic ribosomal protein P11.8e-0465.52Show/hide
Query:  VFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLFD
        V  +I+  GSGGG  +   AAAAPAGGAA AAA A  EKKEE KEESDD D+G SLFD
Subjt:  VFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLFD

P56724 60S acidic ribosomal protein P31.6e-2966.94Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGV+TFVCRSSG +WTAKQ  G+LE SAA+ YELQR LV  A +ADS+  VQSSFS +SP+SAVFQVIIG   GG  I GG AA A +GGAA  A +A  
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLFD
        EKKEE KEES+D DLG SLFD
Subjt:  EKKEEVKEESDDEDLGLSLFD

Q9LVC9 60S acidic ribosomal protein P3-25.3e-3368.33Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVF+FVC+S GG+WTAKQ  GDLE SA+STY+LQR LVQTALSADSSG VQSSFS +SPTSAVF V+IGGG GGGF +GGGAAA   GG   AAA    
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLF
        EKK+E  EE ++ D G  LF
Subjt:  EKKEEVKEESDDEDLGLSLF

Q9SVZ6 60S acidic ribosomal protein P3-12.5e-3066.39Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTFVC++ GG W+AKQ  G+LE SA+STYELQR LVQ +LSADSSG VQSSFS +SPTSAVFQVI+GGG GGGF +GG   AA +GG A  AA AP 
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDE--DLGLSLF
        E  E+ KEES++E  D G  LF
Subjt:  EKKEEVKEESDDE--DLGLSLF

Arabidopsis top hitse value%identityAlignment
AT4G25890.1 60S acidic ribosomal protein family1.7e-3166.39Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVFTFVC++ GG W+AKQ  G+LE SA+STYELQR LVQ +LSADSSG VQSSFS +SPTSAVFQVI+GGG GGGF +GG   AA +GG A  AA AP 
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDE--DLGLSLF
        E  E+ KEES++E  D G  LF
Subjt:  EKKEEVKEESDDE--DLGLSLF

AT5G57290.1 60S acidic ribosomal protein family3.8e-3468.33Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVF+FVC+S GG+WTAKQ  GDLE SA+STY+LQR LVQTALSADSSG VQSSFS +SPTSAVF V+IGGG GGGF +GGGAAA   GG   AAA    
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLF
        EKK+E  EE ++ D G  LF
Subjt:  EKKEEVKEESDDEDLGLSLF

AT5G57290.2 60S acidic ribosomal protein family4.8e-2978.05Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGG
        MGVF+FVC+S GG+WTAKQ  GDLE SA+STY+LQR LVQTALSADSSG VQSSFS +SPTSAVF V+IGGG GGGF +GGG
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGG

AT5G57290.3 60S acidic ribosomal protein family5.4e-3368.33Show/hide
Query:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA
        MGVF+FVC+S GG+WTAKQ  GDLE SA+STY+LQR LVQTALSADSSG VQSSFS +SPTSAVF V+IGGG GGGF +GGGAAA   GG   AAA    
Subjt:  MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPA

Query:  EKKEEVKEESDDEDLGLSLF
        EKK+E  EE ++ D G  LF
Subjt:  EKKEEVKEESDDEDLGLSLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGCGACTGGACCGCCAAGCAGTGTTCCGGCGACCTGGAAGGCTCCGCCGCCTCCACCTATGAGCTCCAGAGGAA
TCTCGTTCAGACTGCTCTCTCCGCCGATTCCTCCGGCGCCGTTCAGTCTTCCTTCTCCTACATCTCCCCCACCTCCGCCGTTTTCCAGGTGATCATTGGTGGCGGTAGCG
GCGGTGGTTTTATTAGCGGTGGAGGAGCAGCTGCAGCCCCTGCGGGTGGAGCTGCACCAGCTGCAGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTTAAGGAAGAGAGT
GATGATGAAGACCTTGGCCTGTCACTTTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
CGTTTTCCTCCATCGCTAGGGTTTCCTCTCATCATAAAAACCAAACGCACATTCCACGAATTTGCCGTTCAGTTCAACTTTCTCATTTTCTTCTTCGAACATCCAACAAT
GGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGCGACTGGACCGCCAAGCAGTGTTCCGGCGACCTGGAAGGCTCCGCCGCCTCCACCTATGAGCTCCAGAGGAATC
TCGTTCAGACTGCTCTCTCCGCCGATTCCTCCGGCGCCGTTCAGTCTTCCTTCTCCTACATCTCCCCCACCTCCGCCGTTTTCCAGGTGATCATTGGTGGCGGTAGCGGC
GGTGGTTTTATTAGCGGTGGAGGAGCAGCTGCAGCCCCTGCGGGTGGAGCTGCACCAGCTGCAGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTTAAGGAAGAGAGTGA
TGATGAAGACCTTGGCCTGTCACTTTTTGATTAGATGGTATAATGACTTGATATTGTTTATGAATCTCATTATTTTTAGAACTCAACTTTTCTGTTTAGGAAATTATCTC
TAAGCATTTACTTGAGTTTTTCCAATTCAGTTGCTGTTCTTGTTAAAGACATGAAATTTTGCCACTGACTCTTTGTTAAATGGTTGAGAATTAGATCTGTCCTTTTGGCA
AGTGTGTGAGTCAGTGATCTTAGTCTAATTTGTTAATTTGCTCATGATATTACAGGGTGAAGTCAATTTTTTTTCTCATAAACCAGTAAGATTGATCTTTCAATTTCATC
AA
Protein sequenceShow/hide protein sequence
MGVFTFVCRSSGGDWTAKQCSGDLEGSAASTYELQRNLVQTALSADSSGAVQSSFSYISPTSAVFQVIIGGGSGGGFISGGGAAAAPAGGAAPAAAEAPAEKKEEVKEES
DDEDLGLSLFD