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Sed0005898 (gene) of Chayote v1 genome

Gene IDSed0005898
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG11:17053178..17053540
RNA-Seq ExpressionSed0005898
SyntenySed0005898
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]7.1e-3571.19Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S SVASLSVQQL D+ITN+IRAQ GG  Q+S MYSKPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]2.7e-3470.34Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S SVASLSVQQL D+IT++IRAQ GG  Q+S MYSKPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.7e-3470.34Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S SVASLSVQQL D+IT++IRAQ GG  Q+S MYSKPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.7e-3470.34Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S SVASLSVQQL D+IT++IRAQ GG  Q+S MYSKPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]7.1e-3571.19Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+P  +V+DKGKN + E QPQ  S SVASLSVQQL D+ITN+IRAQ GG  Q+S MYSKPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

TrEMBL top hitse value%identityAlignment
A0A5A7SIT1 Ty3-gypsy retrotransposon protein7.9e-3266.95Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        + E ERK+  +MK IEERD EIA LK+QM+  ETAESSQ+P  +  DKGKN + E QPQ  S SVASLSV+QL D+I N+IRAQ GG  Q+S MYSKPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

A0A5A7U2G2 Ty3-gypsy retrotransposon protein3.5e-3266.95Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        MAE ERK+  +MK +EERD  I  L+ QM+ RETA+SSQ+P  +  DKGKN + E QPQ  S SVASLSVQQL D+ITN+IRAQ GG  Q+S MYSKPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

A0A5A7UF60 Ty3-gypsy retrotransposon protein7.9e-3265.25Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        MAE E+K+  +MK +EERD EI  L+ QM+ RETAESSQ+P  +  DKGKN + E QPQ  S SVASLS+QQL D+I N+IRAQ GG  Q++ MY KPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRIDSLRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

A0A5D3BZH8 Ty3-gypsy retrotransposon protein6.0e-3266.95Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        MAE ERK+  +MK +EERD EIA LK+QM+  ET ESSQ+P  +  DKGKN + E QPQ  S SVASLSVQQL D+I N+IRAQ GG  Q++ MYSKPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

A0A5D3DXI6 Ty3-gypsy retrotransposon protein3.5e-3266.95Show/hide
Query:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT
        MAE ERK+  +MK +EERD  I  L+ QM+ RETA+SSQ+P  +  DKGKN + E QPQ  S SVASLSVQQL D+ITN+IRAQ GG  Q+S MYSKPYT
Subjt:  MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYT

Query:  KRIDSLRMPAGYQPPKFQ
        KRID+LRMP GYQPPKFQ
Subjt:  KRIDSLRMPAGYQPPKFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTTCCTCAAAAATCAAATGCAGAACCGAGAGACGGCTGAATC
AAGCCAGAGTCCACATGAGAGAGTCAATGATAAAGGAAAGAACCCTCTCCTTGAGACACAACCACAACTGCACTCAGCCTCAGTCGCTTCCTTATCTGTCCAACAGCTAC
ACGACCTGATCACGAACACTATTAGAGCTCAAGGTGGTGGGCTAGTTCAAAGTTCTCTTATGTACTCCAAGCCATACACAAAGAGAATAGACAGCTTAAGAATGCCTGCA
GGATACCAACCGCCTAAGTTCCAAGCGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATCGCTTTCCTCAAAAATCAAATGCAGAACCGAGAGACGGCTGAATC
AAGCCAGAGTCCACATGAGAGAGTCAATGATAAAGGAAAGAACCCTCTCCTTGAGACACAACCACAACTGCACTCAGCCTCAGTCGCTTCCTTATCTGTCCAACAGCTAC
ACGACCTGATCACGAACACTATTAGAGCTCAAGGTGGTGGGCTAGTTCAAAGTTCTCTTATGTACTCCAAGCCATACACAAAGAGAATAGACAGCTTAAGAATGCCTGCA
GGATACCAACCGCCTAAGTTCCAAGCGATTTGA
Protein sequenceShow/hide protein sequence
MAEFERKLEQMMKTIEERDLEIAFLKNQMQNRETAESSQSPHERVNDKGKNPLLETQPQLHSASVASLSVQQLHDLITNTIRAQGGGLVQSSLMYSKPYTKRIDSLRMPA
GYQPPKFQAI