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Sed0005978 (gene) of Chayote v1 genome

Gene IDSed0005978
OrganismSechium edule (Chayote v1)
DescriptionTranscription factor UPBEAT1
Genome locationLG09:37177053..37177481
RNA-Seq ExpressionSed0005978
SyntenySed0005978
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046707.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa]1.1e-2152.91Show/hide
Query:  MGVNFPNTLLLVQLNMKE-TTTQ-----------DTSQNAPIWKQSSM-------EDQEAIKKAKAKG-FNPI-------RRRRRNSLMIKKRSR----S
        MGV+   TLL +QLNM++  TTQ           D+S +  IWK+ SM       EDQE   K K K   N I       RR R NSL++KKRSR    S
Subjt:  MGVNFPNTLLLVQLNMKE-TTTQ-----------DTSQNAPIWKQSSM-------EDQEAIKKAKAKG-FNPI-------RRRRRNSLMIKKRSR----S

Query:  RSLSARIERRVGTLRNLVPNTNGNNGNDEG-SVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSND
         S ++RIE+RV  LRNLVPN + +  +DE  + GSLEQLFTQTADYILSLQTRVRLMKT VDVLS  SSS D
Subjt:  RSLSARIERRVGTLRNLVPNTNGNNGNDEG-SVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSND

KAG6575752.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2361.65Show/hide
Query:  FPNTLLLVQLNMKETTTQDTSQNAPIWKQSSMEDQEAIKKAKAKGFNPIRRRRRNSLMIKKRSRSRSLSARIERRVGTLRNLVPNTNGNNGNDEGSVGSL
        FPNTLLL+QLNM+E  TQD   N  I K+SSME+++   K+        RRRRR S  + K++R RS S RI +RV TLRNLVPN N +N ND    GSL
Subjt:  FPNTLLLVQLNMKETTTQDTSQNAPIWKQSSMEDQEAIKKAKAKGFNPIRRRRRNSLMIKKRSRSRSLSARIERRVGTLRNLVPNTNGNNGNDEGSVGSL

Query:  EQLFTQTADYILSLQTRVRLMKTFVDVLSGSSS
        EQLFT TADYILSLQTRVR M+T VDVLSGSSS
Subjt:  EQLFTQTADYILSLQTRVRLMKTFVDVLSGSSS

KAG6593250.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]2.8e-3066.2Show/hide
Query:  MGVNFPNTLLLVQLNMKETTTQDTSQNAPIWKQSSMEDQEAIKKAKAKGFNPIRRRRRNSLMIKKRSRSRSLSARIERRVGTLRNLVPNTNGNNGNDEGS
        MGV +P TLLLVQLNMKE +  +TS      +Q   E QEAI    AK FN  RRR  NSLM K+RSRS   S RIE+RV TLRNLVPN N NN N E  
Subjt:  MGVNFPNTLLLVQLNMKETTTQDTSQNAPIWKQSSMEDQEAIKKAKAKGFNPIRRRRRNSLMIKKRSRSRSLSARIERRVGTLRNLVPNTNGNNGNDEGS

Query:  VGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSNDHE
        VGSLEQLFTQTADYILSLQTRVR MK  VDVL  S+SSNDHE
Subjt:  VGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSNDHE

KAG7025601.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-2965.49Show/hide
Query:  MGVNFPNTLLLVQLNMKETTTQDTSQNAPIWKQSSMEDQEAIKKAKAKGFNPIRRRRRNSLMIKKRSRSRSLSARIERRVGTLRNLVPNTNGNNGNDEGS
        MGV +P TLLLVQLNMKE +  +TS      ++   E QEAI    AK FN  RRR  NSLM K+RSRS   S RIE+RV TLRNLVPN N NN N E  
Subjt:  MGVNFPNTLLLVQLNMKETTTQDTSQNAPIWKQSSMEDQEAIKKAKAKGFNPIRRRRRNSLMIKKRSRSRSLSARIERRVGTLRNLVPNTNGNNGNDEGS

Query:  VGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSNDHE
        VGSLEQLFTQTADYILSLQTRVR MK  VDVL  S+SSNDHE
Subjt:  VGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSNDHE

XP_031744332.1 transcription factor UPBEAT1 [Cucumis sativus]3.6e-2251.79Show/hide
Query:  MGVNFPNTLLLVQLNMKE-TTTQD-----------TSQNAPIWKQSSMEDQEAIKKAKAKGFN------------PIRRRRRNSLMIKKRSR--SRSLSA
        MGV+   TLL +QLNM++  TTQD            S +   WK++SM+++E +++  +KG +              RR R NSL++KKRSR  S S S+
Subjt:  MGVNFPNTLLLVQLNMKE-TTTQD-----------TSQNAPIWKQSSMEDQEAIKKAKAKGFN------------PIRRRRRNSLMIKKRSR--SRSLSA

Query:  RIERRVGTLRNLVPNTNGNN--GNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSND
        RIE+RV TLR+LVPN + +N    DE  VGSLEQLFTQTADYILSLQTRVRLMKT VDVLS  SSS D
Subjt:  RIERRVGTLRNLVPNTNGNN--GNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSND

TrEMBL top hitse value%identityAlignment
A0A0A0K6D9 Uncharacterized protein1.8e-2251.79Show/hide
Query:  MGVNFPNTLLLVQLNMKE-TTTQD-----------TSQNAPIWKQSSMEDQEAIKKAKAKGFN------------PIRRRRRNSLMIKKRSR--SRSLSA
        MGV+   TLL +QLNM++  TTQD            S +   WK++SM+++E +++  +KG +              RR R NSL++KKRSR  S S S+
Subjt:  MGVNFPNTLLLVQLNMKE-TTTQD-----------TSQNAPIWKQSSMEDQEAIKKAKAKGFN------------PIRRRRRNSLMIKKRSR--SRSLSA

Query:  RIERRVGTLRNLVPNTNGNN--GNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSND
        RIE+RV TLR+LVPN + +N    DE  VGSLEQLFTQTADYILSLQTRVRLMKT VDVLS  SSS D
Subjt:  RIERRVGTLRNLVPNTNGNN--GNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSND

A0A445F6P8 Transcription factor UPBEAT16.1e-0752.75Show/hide
Query:  KAKGFNPIRRRRRNSLMIKKRSRSRSLSAR-IERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGS
        K KG     RR R  LM+ +RS SR  S   I RRV TL++LVPN++        S+G L+ LF QTADYILSLQTRVR+M+  V VL+GS
Subjt:  KAKGFNPIRRRRRNSLMIKKRSRSRSLSAR-IERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGS

A0A5A7TXU1 Transcription factor UPBEAT15.1e-2252.91Show/hide
Query:  MGVNFPNTLLLVQLNMKE-TTTQ-----------DTSQNAPIWKQSSM-------EDQEAIKKAKAKG-FNPI-------RRRRRNSLMIKKRSR----S
        MGV+   TLL +QLNM++  TTQ           D+S +  IWK+ SM       EDQE   K K K   N I       RR R NSL++KKRSR    S
Subjt:  MGVNFPNTLLLVQLNMKE-TTTQ-----------DTSQNAPIWKQSSM-------EDQEAIKKAKAKG-FNPI-------RRRRRNSLMIKKRSR----S

Query:  RSLSARIERRVGTLRNLVPNTNGNNGNDEG-SVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSND
         S ++RIE+RV  LRNLVPN + +  +DE  + GSLEQLFTQTADYILSLQTRVRLMKT VDVLS  SSS D
Subjt:  RSLSARIERRVGTLRNLVPNTNGNNGNDEG-SVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGSSSSND

A0A6A4QW51 Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein8.8e-0645.78Show/hide
Query:  IRRRRRNSLMIKKRSRSRSLSARIERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGS
        ++ +R   +++KKR  SR     I+RRV TL+ LVPN+             L+ LFT+TADYIL+LQTRVR+M+  V+VL+GS
Subjt:  IRRRRRNSLMIKKRSRSRSLSARIERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGS

I1NHA0 BHLH transcription factor6.1e-0752.75Show/hide
Query:  KAKGFNPIRRRRRNSLMIKKRSRSRSLSAR-IERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGS
        K KG     RR R  LM+ +RS SR  S   I RRV TL++LVPN++        S+G L+ LF QTADYILSLQTRVR+M+  V VL+GS
Subjt:  KAKGFNPIRRRRRNSLMIKKRSRSRSLSAR-IERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLSGS

SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT12.5e-0542.7Show/hide
Query:  IRRRRRNSLMIKK---RSR-----SRSLSARIERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLS
        +RR+R    ++KK   R R     SR     I RRV TL+ LVPNT  + G        L+ LF QTADYIL+L+ +V++M+T V VL+
Subjt:  IRRRRRNSLMIKK---RSR-----SRSLSARIERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLS

Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators1.8e-0642.7Show/hide
Query:  IRRRRRNSLMIKK---RSR-----SRSLSARIERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLS
        +RR+R    ++KK   R R     SR     I RRV TL+ LVPNT  + G        L+ LF QTADYIL+L+ +V++M+T V VL+
Subjt:  IRRRRRNSLMIKK---RSR-----SRSLSARIERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQTADYILSLQTRVRLMKTFVDVLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTCAATTTCCCAAATACCCTTTTGCTAGTTCAACTCAACATGAAAGAAACAACAACACAAGACACCTCACAAAATGCACCCATATGGAAACAATCATCAATGGA
AGATCAAGAAGCCATTAAAAAAGCCAAAGCAAAAGGCTTCAACCCAATTAGAAGAAGAAGAAGAAACTCATTGATGATCAAGAAGAGATCAAGATCAAGATCATTATCAG
CTAGAATCGAGCGAAGAGTCGGCACATTGAGAAACCTTGTACCGAACACGAATGGCAACAACGGGAACGACGAAGGCTCTGTCGGATCATTAGAACAGCTTTTCACTCAA
ACAGCTGATTACATATTGTCTTTGCAAACAAGAGTGAGATTGATGAAGACTTTCGTTGATGTCTTGTCTGGTTCTTCTTCTTCCAATGATCATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTCAATTTCCCAAATACCCTTTTGCTAGTTCAACTCAACATGAAAGAAACAACAACACAAGACACCTCACAAAATGCACCCATATGGAAACAATCATCAATGGA
AGATCAAGAAGCCATTAAAAAAGCCAAAGCAAAAGGCTTCAACCCAATTAGAAGAAGAAGAAGAAACTCATTGATGATCAAGAAGAGATCAAGATCAAGATCATTATCAG
CTAGAATCGAGCGAAGAGTCGGCACATTGAGAAACCTTGTACCGAACACGAATGGCAACAACGGGAACGACGAAGGCTCTGTCGGATCATTAGAACAGCTTTTCACTCAA
ACAGCTGATTACATATTGTCTTTGCAAACAAGAGTGAGATTGATGAAGACTTTCGTTGATGTCTTGTCTGGTTCTTCTTCTTCCAATGATCATGAGTGA
Protein sequenceShow/hide protein sequence
MGVNFPNTLLLVQLNMKETTTQDTSQNAPIWKQSSMEDQEAIKKAKAKGFNPIRRRRRNSLMIKKRSRSRSLSARIERRVGTLRNLVPNTNGNNGNDEGSVGSLEQLFTQ
TADYILSLQTRVRLMKTFVDVLSGSSSSNDHE