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Sed0006021 (gene) of Chayote v1 genome

Gene IDSed0006021
OrganismSechium edule (Chayote v1)
DescriptionPSII 6.1 kDa protein
Genome locationLG11:2039307..2041277
RNA-Seq ExpressionSed0006021
SyntenySed0006021
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008456049.1 PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo]1.2e-4376.69Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HS ++LK S   LP  TMAA RLP +QKMK G +KC++EEKPEGK    S    TVAAVAMAA+AAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        LGWILAG FGLIW+LYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

XP_022937622.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]8.6e-4781.2Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGI LK SP  LP P MAA RLPVVQKMKKGG+KC+LEEK EGK    S  S TVAA+A   VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        LGWILAG FG IW+LYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

XP_022966002.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]4.7e-4580.45Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGKST----TSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGI LK SP  LP P MAA RL VVQK KKGG+KCRLEEK E KS+     S TVAAVA   VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGKST----TSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        LGWILAG FG IW+LYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

XP_023521133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]1.5e-4681.95Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGI LK SP  LP P MAA RL VVQKMKKGG+KCRLEEK EGK    S  S TVAAVA   VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        LGWILAG FG IW+LYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]5.6e-4678.95Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHS ++LK S   LP P +AA RLP++QKMKKGG+KCR+EEKPEGK    S  S T+AAVAMAA+AAAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        LGWILAG F LIW+LYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

TrEMBL top hitse value%identityAlignment
A0A0A0LJA2 PSII 6.1 kDa protein2.1e-4376.12Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK-----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNN
        MASTLL HS ++LK S   L  PTMAA RLP +QKMKKGG+KC +EEKPEGK     S    TV AVAMAA+AAAGPAVALVDERLSTEGTGLPFGLSNN
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK-----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNN

Query:  LLGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        LLGWILA  F LIW+LYFVYASSL+EDEDSGLSL
Subjt:  LLGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

A0A1S3C2B0 PSII 6.1 kDa protein5.7e-4476.69Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLL HS ++LK S   LP  TMAA RLP +QKMK G +KC++EEKPEGK    S    TVAAVAMAA+AAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        LGWILAG FGLIW+LYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

A0A6J1CNY5 PSII 6.1 kDa protein5.7e-4475.94Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPE----GKSTTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSG+ LK SP   PLP MAA RL +V KMKKGG+KC++EE+PE    G+ST S T+AAV  A VAAAGPA ALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPE----GKSTTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        L WILAG F LIW+LYFVYASSL+EDEDSGLSL
Subjt:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein4.2e-4781.2Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGI LK SP  LP P MAA RLPVVQKMKKGG+KC+LEEK EGK    S  S TVAA+A   VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGK----STTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        LGWILAG FG IW+LYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

A0A6J1HLU7 PSII 6.1 kDa protein2.3e-4580.45Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGKST----TSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MASTLLSHSGI LK SP  LP P MAA RL VVQK KKGG+KCRLEEK E KS+     S TVAAVA   VA AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGKST----TSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        LGWILAG FG IW+LYFVYASSLEEDEDSGLSL
Subjt:  LGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic4.6e-2759.26Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARR----LPVVQKMKKGGVKCRLEEKPEGKSTTSATVAAVAMAAVAA--AGPAVALVDERLSTEGTGLPFGLSN
        MAS   S S  V  A P  L  PT+A       LP + K KKGGV+C +E K    S   A V+A A AA+ A  + PA+ALVDER+STEGTGLPFGLSN
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARR----LPVVQKMKKGGVKCRLEEKPEGKSTTSATVAAVAMAAVAA--AGPAVALVDERLSTEGTGLPFGLSN

Query:  NLLGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        NLLGWIL G FGLIW+ +FVY SSLEEDE+SGLSL
Subjt:  NLLGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic3.9e-2655.56Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKP---EGKSTTSATVAAVAMAAVAAA---GPAVALVDERLSTEGTGLPFGLSN
        +A   L H+  V  +S   L LP+M           K+  V C +E KP   E  +TT+ ++ A  +AA AAA    PA+ALVDER+STEGTGLPFGLSN
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKP---EGKSTTSATVAAVAMAAVAAA---GPAVALVDERLSTEGTGLPFGLSN

Query:  NLLGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        NLLGWIL G FGLIW+LYFVYAS LEEDE+SGLSL
Subjt:  NLLGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic1.6e-1953.61Show/hide
Query:  LPVVQKMKKGGVKCRLEEKPEGKSTTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGGFGLIWSLYFVYASSLEEDEDSG
        LP ++  +   V+C   ++    +       A  +A  A A PA+ALVDER+STEGTGL  GLSNNLLGWIL G FGLIWSLY +Y S LEEDE+SG
Subjt:  LPVVQKMKKGGVKCRLEEKPEGKSTTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGGFGLIWSLYFVYASSLEEDEDSG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic5.7e-0936.52Show/hide
Query:  LPTMAARRLPVVQK-MKKGGVKCRLEEKPEGKSTTSATVAAVAM----AAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGGFGLIWSLYFVYA
        +  ++AR   V  K + + G +  +    +  +  S     VAM     A  AA PA ALVDER++ +GTG PFG+++ +LGW+L G FG +W+++F+  
Subjt:  LPTMAARRLPVVQK-MKKGGVKCRLEEKPEGKSTTSATVAAVAM----AAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGGFGLIWSLYFVYA

Query:  SSLE--EDEDSGLSL
          L   ED D GL L
Subjt:  SSLE--EDEDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W3.3e-2859.26Show/hide
Query:  MASTLLSHSGIVLKASPNFLPLPTMAARR----LPVVQKMKKGGVKCRLEEKPEGKSTTSATVAAVAMAAVAA--AGPAVALVDERLSTEGTGLPFGLSN
        MAS   S S  V  A P  L  PT+A       LP + K KKGGV+C +E K    S   A V+A A AA+ A  + PA+ALVDER+STEGTGLPFGLSN
Subjt:  MASTLLSHSGIVLKASPNFLPLPTMAARR----LPVVQKMKKGGVKCRLEEKPEGKSTTSATVAAVAMAAVAA--AGPAVALVDERLSTEGTGLPFGLSN

Query:  NLLGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL
        NLLGWIL G FGLIW+ +FVY SSLEEDE+SGLSL
Subjt:  NLLGWILAGGFGLIWSLYFVYASSLEEDEDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTCTGCTTTCCCACTCTGGGATTGTGCTCAAAGCATCACCCAATTTTCTTCCATTGCCAACAATGGCGGCTCGCAGGTTGCCTGTGGTGCAAAAGATGAA
GAAGGGAGGGGTTAAGTGCAGGTTGGAAGAGAAGCCAGAGGGAAAGAGCACGACTTCGGCGACCGTGGCGGCTGTGGCGATGGCTGCAGTGGCAGCAGCGGGACCGGCCG
TGGCGCTCGTGGACGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCTGGGGGGTTTGGTTTAATTTGGTCT
CTCTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTCTGA
mRNA sequenceShow/hide mRNA sequence
GTGGTTCATAAAAAAAAACAACCCTTTTTCACAACTTAAAAACACACAAAAATAGAACAAAAATCTATAGATCTGAGAGTGTTTGCAGCCAAATCAAATCCTTTCCCTTC
CCCATCTCTACCAAGAAAACAATGGCTTCCACTCTGCTTTCCCACTCTGGGATTGTGCTCAAAGCATCACCCAATTTTCTTCCATTGCCAACAATGGCGGCTCGCAGGTT
GCCTGTGGTGCAAAAGATGAAGAAGGGAGGGGTTAAGTGCAGGTTGGAAGAGAAGCCAGAGGGAAAGAGCACGACTTCGGCGACCGTGGCGGCTGTGGCGATGGCTGCAG
TGGCAGCAGCGGGACCGGCCGTGGCGCTCGTGGACGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTGGGGTGGATTCTGGCTGGG
GGGTTTGGTTTAATTTGGTCTCTCTATTTTGTTTATGCTTCATCCTTGGAGGAGGATGAAGATTCTGGTTTGTCACTCTGAATCAATCACAGCATTTCTTAAGATTTATG
ATTTTAAATTGGTCTTACAAACAAGTATGAAGCATCAAAACATATTTGTTATCGAACGAGCTTGAGGTAACATGAACATAGCTCAACTAATATTCTACGGTTTACTTTCC
TTGAATATATGATTTAGATTCTTACCCCA
Protein sequenceShow/hide protein sequence
MASTLLSHSGIVLKASPNFLPLPTMAARRLPVVQKMKKGGVKCRLEEKPEGKSTTSATVAAVAMAAVAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGGFGLIWS
LYFVYASSLEEDEDSGLSL