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Sed0006029 (gene) of Chayote v1 genome

Gene IDSed0006029
OrganismSechium edule (Chayote v1)
DescriptionRING/FYVE/PHD-type zinc finger family protein isoform 1
Genome locationLG08:39101815..39102129
RNA-Seq ExpressionSed0006029
SyntenySed0006029
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044701.1 hypothetical protein E6C27_scaffold46G004570 [Cucumis melo var. makuwa]1.1e-2376Show/hide
Query:  SLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD
        +LS  RK N+P S R+L +LQRRR QQI NCGEKVS SQCSQ+ KCRWCRSD++DDTCF+RAEALRLPQQVFSCD
Subjt:  SLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD

KAG6573331.1 hypothetical protein SDJN03_27218, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2871.74Show/hide
Query:  IFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD
        IF++ F+F S    S N+LSE RK N P SDR LLSLQRRR ++IPNCGEKVS  QCS++P CRWCRSD +DDTCFSRAEALRLPQQVFSCD
Subjt:  IFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD

KDP21149.1 hypothetical protein JCGZ_21620 [Jatropha curcas]6.4e-1652.63Show/hide
Query:  SFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD
        SF IF+IF    ++  +S +  S  +  +   S RSLL+ QR   QQIPNC   V+ SQCSQ+PKCRWC+S+ +DD CFS+ EA RLPQQVF CD
Subjt:  SFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD

OMO65460.1 hypothetical protein COLO4_31211 [Corchorus olitorius]4.9e-1668.85Show/hide
Query:  RSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD
        RSLL+LQR    QIPNCGE +S SQC Q+PKCRWCRS+ +DD CF ++EA RLPQQVF CD
Subjt:  RSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD

XP_038723734.1 uncharacterized protein LOC120015395 [Tripterygium wilfordii]2.0e-1447.47Show/hide
Query:  SFFIFIIFFIFTSIFFA-SCNSLSEHRKSNTPISDRSLLSLQRR---RTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD
        S  + ++  IF+ ++ A S + ++     ++  S RS+L+ QRR    ++QIP+CG+ VS S CSQ+P+CRWCRSD +DD CFS+ EA RLPQQVF+CD
Subjt:  SFFIFIIFFIFTSIFFA-SCNSLSEHRKSNTPISDRSLLSLQRR---RTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD

TrEMBL top hitse value%identityAlignment
A0A061GFG8 Uncharacterized protein2.2e-1447.57Show/hide
Query:  SSDLPRSFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISD--RSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVF
        SS L   F I  +  +  S   +S +S  ++     P     R+LL LQR    QIP+CGE +S SQC Q+PKCRWC S+ +D+ CFS+AEA RLPQQVF
Subjt:  SSDLPRSFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISD--RSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVF

Query:  SCD
         CD
Subjt:  SCD

A0A067JNS3 Uncharacterized protein3.1e-1652.63Show/hide
Query:  SFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD
        SF IF+IF    ++  +S +  S  +  +   S RSLL+ QR   QQIPNC   V+ SQCSQ+PKCRWC+S+ +DD CFS+ EA RLPQQVF CD
Subjt:  SFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD

A0A0A0LX55 Uncharacterized protein1.1e-2970.3Show/hide
Query:  SSDLPRSFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSC
        SS L     IF+I F+F   FF SCN+LS  RK N+P S R+L SLQRRR QQI NCGEKVS  QCSQ+PKCRWCRSD++DDTCF+RAEALRLPQQVFSC
Subjt:  SSDLPRSFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSC

Query:  D
        D
Subjt:  D

A0A1R3H5C1 Uncharacterized protein2.4e-1668.85Show/hide
Query:  RSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD
        RSLL+LQR    QIPNCGE +S SQC Q+PKCRWCRS+ +DD CF ++EA RLPQQVF CD
Subjt:  RSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD

A0A5A7TT10 Uncharacterized protein5.2e-2476Show/hide
Query:  SLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD
        +LS  RK N+P S R+L +LQRRR QQI NCGEKVS SQCSQ+ KCRWCRSD++DDTCF+RAEALRLPQQVFSCD
Subjt:  SLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTGAGCTCCGATCTTCCCAGATCTTTCTTCATTTTCATCATCTTCTTCATCTTCACATCAATCTTCTTCGCCTCATGCAATTCCCTATCCGAGCATCGCAAATC
CAACACGCCCATTTCAGATCGCAGTTTGTTGAGCTTACAGAGAAGGAGAACTCAACAGATCCCTAATTGCGGCGAGAAGGTTTCCCCCTCACAGTGTTCGCAGAGCCCCA
AATGCCGCTGGTGCCGGAGCGATCTCGTCGACGATACCTGCTTCTCCAGAGCCGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCATGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTGAGCTCCGATCTTCCCAGATCTTTCTTCATTTTCATCATCTTCTTCATCTTCACATCAATCTTCTTCGCCTCATGCAATTCCCTATCCGAGCATCGCAAATC
CAACACGCCCATTTCAGATCGCAGTTTGTTGAGCTTACAGAGAAGGAGAACTCAACAGATCCCTAATTGCGGCGAGAAGGTTTCCCCCTCACAGTGTTCGCAGAGCCCCA
AATGCCGCTGGTGCCGGAGCGATCTCGTCGACGATACCTGCTTCTCCAGAGCCGAGGCTTTGAGATTGCCCCAACAGGTCTTTTCATGTGATTGA
Protein sequenceShow/hide protein sequence
MELSSDLPRSFFIFIIFFIFTSIFFASCNSLSEHRKSNTPISDRSLLSLQRRRTQQIPNCGEKVSPSQCSQSPKCRWCRSDLVDDTCFSRAEALRLPQQVFSCD