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Sed0006030 (gene) of Chayote v1 genome

Gene IDSed0006030
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationLG12:4782649..4785639
RNA-Seq ExpressionSed0006030
SyntenySed0006030
Gene Ontology termsGO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter (biological process)
GO:0006283 - transcription-coupled nucleotide-excision repair (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006379 - mRNA cleavage (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR034012 - Pol II subunit B9, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3962034.1 hypothetical protein CMV_013412 [Castanea mollissima]7.6e-6397.37Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDKD+KILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDV ADPTLPRTK VRCTQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_008438942.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo]7.6e-6397.37Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRC QCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_030503042.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa]3.4e-6398.25Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRC QCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_030973713.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Quercus lobata]5.8e-6397.37Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDKD+KILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDV ADPTLPRTK+VRCTQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_042991161.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Carya illinoinensis]5.8e-6397.37Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

TrEMBL top hitse value%identityAlignment
A0A5A7U5C7 DNA-directed RNA polymerase subunit3.7e-6397.37Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRC QCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A6J1I879 DNA-directed RNA polymerase subunit3.7e-6397.37Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRC QCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A7J6EH48 DNA-directed RNA polymerase subunit1.7e-6398.25Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRC QCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A7N2LY24 DNA-directed RNA polymerase subunit2.8e-6397.37Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDKD+KILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDV ADPTLPRTK+VRCTQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A803R402 Uncharacterized protein1.7e-6398.25Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRC QCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

SwissProt top hitse value%identityAlignment
P36954 DNA-directed RNA polymerase II subunit RPB91.8e-3859.82Show/hide
Query:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

P60898 DNA-directed RNA polymerase II subunit RPB91.8e-3859.82Show/hide
Query:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

Q32P73 DNA-directed RNA polymerase II subunit RPB91.8e-3859.82Show/hide
Query:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

Q6NLH0 DNA-directed RNA polymerases II, IV and V subunit 9A1.3e-6088.6Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++KILLYACRNCDHQEVADN+CVYRNE+HHSV ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWR+
Subjt:  FVCCNPNCGHRWRD

Q8L5V0 DNA-directed RNA polymerases II, IV and V subunit 9B6.3e-6086.84Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++ ILLYACRNCDHQE ADNNCVYRNE+HHSV E+TQ+L DVA+DPTLPRTKAVRC +C HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNC HRWR+
Subjt:  FVCCNPNCGHRWRD

Arabidopsis top hitse value%identityAlignment
AT3G16980.1 RNA polymerases M/15 Kd subunit9.0e-6288.6Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++KILLYACRNCDHQEVADN+CVYRNE+HHSV ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWR+
Subjt:  FVCCNPNCGHRWRD

AT4G16265.1 RNA polymerases M/15 Kd subunit4.4e-6186.84Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++ ILLYACRNCDHQE ADNNCVYRNE+HHSV E+TQ+L DVA+DPTLPRTKAVRC +C HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNC HRWR+
Subjt:  FVCCNPNCGHRWRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTACCATGAAATTTTGCCGGGAATGTAACAACATTCTCTACCCGAAGGAGGACAAAGATGAGAAGATTCTTCTCTATGCGTGTCGCAATTGTGATCACCAGGAAGT
TGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCATTCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTG
TTCGATGCACTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGAGGAAGGTATGACACTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCAC
AGATGGAGAGATTGA
mRNA sequenceShow/hide mRNA sequence
GTAAGCAGTAAAGTTCTGCAATTTTCTCCCGCCAATGGAACAAAGCTCTTCTCTTTCGCCGGATCAACGTTTCTAGAAACCGCAGCCGATTCAGATTCCTGAACTTCTGC
GAAAACCCTAGCAGAAATTTGAGCTCCTTGTTCTTCAATCTTCTGCAAGATGAGTACCATGAAATTTTGCCGGGAATGTAACAACATTCTCTACCCGAAGGAGGACAAAG
ATGAGAAGATTCTTCTCTATGCGTGTCGCAATTGTGATCACCAGGAAGTTGCTGACAATAACTGTGTCTATAGGAATGAGATTCATCATTCTGTAGGGGAACGCACTCAA
GTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTTCGATGCACTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGCCACTGCCAGAGGAGA
GGAAGGTATGACACTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGATATCAAATCCCATTTTGCAATCAAAGTCGTGTTGGTGTGTGGAGCG
TCATCGAAAACATAATCGTGTTGCATGGGATTTTACAATTTGTACTGATTGTCAATTTGGGTTGATTAGAACCACAAACTTTGCAACTTTGCAGAGATGTAATGGAAAAA
GTACTAAATTCTACTTGTTTTAGTTTCGTTTCTCACTTTCAACTTCTGAAAACATCATTAAAAAAGTCGTTGGGAAAATCAA
Protein sequenceShow/hide protein sequence
MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGH
RWRD