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Sed0006046 (gene) of Chayote v1 genome

Gene IDSed0006046
OrganismSechium edule (Chayote v1)
DescriptionCalcium-binding EF-hand
Genome locationLG13:22377677..22378460
RNA-Seq ExpressionSed0006046
SyntenySed0006046
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064377.1 Calcium-binding EF-hand [Cucumis melo var. makuwa]4.2e-3582.42Show/hide
Query:  FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII
        F + V DYKRCPVPFSRDQLR+IFLKHDGDGDGRLSR+ELK AF+SLGSNWS FRARQ LKAAD+DGDGYVT+ ELD LLDYAVR +YAII
Subjt:  FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII

KAG6591371.1 putative calcium-binding protein CML10, partial [Cucurbita argyrosperma subsp. sororia]7.0e-3884.21Show/hide
Query:  MSF-FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII
        MSF FR+ V DYKRCPVPFSR+QLR+IFLKHDGDGDGRLSR+ELK AF+SLGSNWS FRARQ LKAADSDGDGYVT+ ELDRLLDY+VRC+YAII
Subjt:  MSF-FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII

KAG6608480.1 putative calcium-binding protein CML10, partial [Cucurbita argyrosperma subsp. sororia]2.8e-3982.98Show/hide
Query:  MSFFRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII
        M FFRS +CDYKRCPVPF+++QLREIFL+HD DGDGRLSR+ELK AFESLGSNWS FRARQCLKAADS+GDGYVT+ ELD LLDYAVRC+YAII
Subjt:  MSFFRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII

KAG7029343.1 Calcium-binding protein CML37, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-1753.01Show/hide
Query:  YKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAI
        YKR  VPFS +QL  +F  HDGDGDG+L++ ELK+AF+ LGS +SSFR  + L+AAD DGDG++++ E+D+L+ YA    Y +
Subjt:  YKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAI

KGN55186.1 hypothetical protein Csa_012423 [Cucumis sativus]1.2e-3785.71Show/hide
Query:  FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII
        F + V DYKRCPVPFSRDQLR+IFLKHDGDGDGRLSR+ELK AFESLGSNWS FRARQ LKAAD+DGDGYVT+ ELDRLLDYAVRC+YAII
Subjt:  FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII

TrEMBL top hitse value%identityAlignment
A0A0A0L4V0 Uncharacterized protein5.8e-3885.71Show/hide
Query:  FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII
        F + V DYKRCPVPFSRDQLR+IFLKHDGDGDGRLSR+ELK AFESLGSNWS FRARQ LKAAD+DGDGYVT+ ELDRLLDYAVRC+YAII
Subjt:  FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII

A0A2N9FYQ0 Uncharacterized protein3.3e-1748.84Show/hide
Query:  VCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAI
        V  +KR  +PF+ +QL  IF  HD DGDG+LS+ E+K+AF+ LGS W ++RA Q +  AD+D DGY+   EL +L+ YA+ C Y I
Subjt:  VCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAI

A0A5A7VBH2 Calcium-binding EF-hand2.1e-3582.42Show/hide
Query:  FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII
        F + V DYKRCPVPFSRDQLR+IFLKHDGDGDGRLSR+ELK AF+SLGSNWS FRARQ LKAAD+DGDGYVT+ ELD LLDYAVR +YAII
Subjt:  FRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII

A0A5N6RQV2 Uncharacterized protein4.3e-1755.06Show/hide
Query:  RSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAI
        R +V  +K   V F+RDQL  IF  HD DGDG+LSR E+K AF  LGS W S+RA   L  ADSD DGYV   EL +L+DYA++C Y I
Subjt:  RSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAI

A0A7N2KRS3 Uncharacterized protein4.3e-1749.44Show/hide
Query:  RSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAI
        R     +KR  VPF+  QL  IF  HD DGDG+LSR ELK AF+ LGS W ++R  Q L+ AD++ DGY+T  EL +L++YA+ C Y +
Subjt:  RSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAI

SwissProt top hitse value%identityAlignment
A0T2M3 Polcalcin Cup a 43.3e-0640.35Show/hide
Query:  QLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHE
        +L E+F K D +GDG++S  EL     S+GS       +  ++ AD+DGDGYV++ E
Subjt:  QLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHE

O64943 Polcalcin Jun o 21.5e-0642.11Show/hide
Query:  QLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHE
        +L E+F K D +GDG++S  EL     SLGS+      +  ++ AD+DGDGYV++ E
Subjt:  QLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHE

Q6L4D4 Probable calcium-binding protein CML151.3e-0740.32Show/hide
Query:  PFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHE
        P + D+   +F K D +GDGR+SR EL   F S+G   +     + ++ ADSDGDGY+++ E
Subjt:  PFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHE

Q8RZB5 Probable calcium-binding protein CML107.8e-0838.24Show/hide
Query:  PVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRL
        P P   +++  +F K D +GDGR+SR EL   FESLG   +     + +  AD+DGDG++++ E   L
Subjt:  PVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRL

Q9S744 Calmodulin-like protein 92.5e-0634.92Show/hide
Query:  DQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLL
        D+L E+F   D DGDG +S++EL    + +G   ++  A   ++ AD DGDG+++ HE  +++
Subjt:  DQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLL

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein1.5e-0630.65Show/hide
Query:  DQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRL
        ++L+++F + D +GDG++S +EL   F+++G++++     + L+  D+D DGY+ + E   L
Subjt:  DQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRL

AT1G18210.2 Calcium-binding EF-hand family protein1.5e-0630.65Show/hide
Query:  DQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRL
        ++L+++F + D +GDG++S +EL   F+++G++++     + L+  D+D DGY+ + E   L
Subjt:  DQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRL

AT1G76640.1 Calcium-binding EF-hand family protein2.0e-0639.34Show/hide
Query:  LREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLL
        L  +F   D + DGR+S  ELK++F++LG   S   A   +K +D DGDG + I+E   L+
Subjt:  LREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLL

AT3G50770.1 calmodulin-like 414.4e-0638.89Show/hide
Query:  SRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDG
        S+++LR++F   D DGDG++S  EL+  F S+G   S   A++ +   D+D DG
Subjt:  SRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDG

AT3G51920.1 calmodulin 91.8e-0734.92Show/hide
Query:  DQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLL
        D+L E+F   D DGDG +S++EL    + +G   ++  A   ++ AD DGDG+++ HE  +++
Subjt:  DQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTCTTCCGCAGCAGCGTGTGCGATTACAAGCGATGTCCAGTTCCGTTCTCGCGGGATCAGCTTCGCGAGATTTTCCTCAAGCACGACGGCGATGGAGACGGGCG
GCTGTCGCGGGTGGAGCTAAAACGGGCGTTTGAATCGTTAGGATCGAATTGGAGCAGTTTCAGAGCTCGTCAGTGTCTTAAAGCCGCTGATTCCGACGGCGATGGTTACG
TTACAATTCATGAACTTGATCGCCTTCTTGATTATGCTGTAAGATGTGATTACGCTATCATTTAA
mRNA sequenceShow/hide mRNA sequence
TTGATTTCAAAAAAAAAGAAGAAAAAAAGAAAACCTAGGGTCATAATTTAATATTATTAAAATGTGCTAATTCATTTAATATGTCAAGTTGAGTTAGGGTCACAATTTAA
TATTCTTAAACATTTAAAGTGGTTGTTATAATAAGAAACCTAGACCTCCTTTGATAGTAATTGGGAGGAGTAATACCCATTAGTAGGACTTGTAATCTTCCTCCCTTAAT
TTCAAAAAAAAAAAAAAAAACAAACTTACACGAACCAATCAAATAGTCAAATAGACCATAACTTAATCGACAATGATGTATTCAATTTAATTTTTTTTTTTTTTAAAACG
AAGAGCTGAAAGGAAATAAATAGTCGAAACCAGTCCTGCAAGCAAGCTAAGGCCCGGCAGCGTGTGCGATTAGCTTCGATGAGCTTCTTCCGCAGCAGCGTGTGCGATTA
CAAGCGATGTCCAGTTCCGTTCTCGCGGGATCAGCTTCGCGAGATTTTCCTCAAGCACGACGGCGATGGAGACGGGCGGCTGTCGCGGGTGGAGCTAAAACGGGCGTTTG
AATCGTTAGGATCGAATTGGAGCAGTTTCAGAGCTCGTCAGTGTCTTAAAGCCGCTGATTCCGACGGCGATGGTTACGTTACAATTCATGAACTTGATCGCCTTCTTGAT
TATGCTGTAAGATGTGATTACGCTATCATTTAATTTTATCCATCTTTTATTATTATTATTATGTCTTAACTATTATTAAAAACCCTATATCATAACTTGAATGGAACTAA
ATCATAACTTGAAC
Protein sequenceShow/hide protein sequence
MSFFRSSVCDYKRCPVPFSRDQLREIFLKHDGDGDGRLSRVELKRAFESLGSNWSSFRARQCLKAADSDGDGYVTIHELDRLLDYAVRCDYAII